BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0011.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00186027.1| hypothetical protein Rxyl319501 [Rubrobacter ... 94 3e-18 ref|NP_373102.1| hypothetical protein [Staphylococcus aureus sub... 73 4e-12 ref|NP_784619.1| transcription regulator (putative) [Lactobacill... 69 6e-11 ref|NP_768856.1| transcriptional regulatory protein [Bradyrhizob... 59 8e-08 ref|NP_827765.1| putative TetR-family transcriptional regulator ... 58 2e-07 >ref|ZP_00186027.1| hypothetical protein Rxyl319501 [Rubrobacter xylanophilus DSM 9941] Length = 230 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 3/180 (1%) Query: 31 QRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERFLSR 90 +RI+EAA LF E G VSM IA+ AGIG+G+LYRRF KG +C ALL + + Sbjct: 38 RRIVEAARRLFAERGACAVSMEEIAREAGIGKGTLYRRFPHKGVLCEALLDEPTRQLQEE 97 Query: 91 LEQELQATTGASNSLEDLQSSIEQVVDFIDQHAELLQMIKSEFTGKKQLTQFEHPIFRRL 150 ++L A G S LE L + ++ F +++ +LL +G+ ++ + HP + Sbjct: 98 TMRDL-ADPG-SGPLEKLDRFLSRLARFTEENLDLLYGGHEPLSGEARVAYYSHPAHQWR 155 Query: 151 NEVMTQRLRRAADDGLLI-AVDPQFAATALIAVLSPDLYLYQQKLHNSTKEEISRGVLAL 209 + LR A +G L +D ++ + AL+A L DLY +Q+++ + E I+ G+ +L Sbjct: 156 RWTVLGLLRAAVREGALGEELDVEYLSEALLAPLGVDLYYHQRRVQGMSAERIAAGLRSL 215 >ref|NP_373102.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_375690.1| hypothetical protein, similar to transcription regulator acrR [Staphylococcus aureus subsp. aureus N315] ref|NP_647315.1| ORFID:MW2498~hypothetical protein, similar to transcription regulator acrR [Staphylococcus aureus subsp. aureus MW2] pir||C90063 hypothetical protein SA2364 [imported] - Staphylococcus aureus (strain N315) dbj|BAB43669.1| SA2364 [Staphylococcus aureus subsp. aureus N315] dbj|BAB58740.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB96363.1| MW2498 [Staphylococcus aureus subsp. aureus MW2] Length = 185 Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 94/186 (50%), Gaps = 12/186 (6%) Query: 31 QRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERFLSR 90 QRI E A LF+E G+E +SM IAK GIG G+LYR F DK ++C ++ + F++ Sbjct: 10 QRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIFITH 69 Query: 91 LEQELQATTGASNSLEDLQSSIEQVVDFIDQHAELLQMIKSEFTGKKQLTQFEHPIFRRL 150 + Q ++ E +Q S++ ++ F + LLQ I++ G +L ++ ++ L Sbjct: 70 FK---QIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEA---GNNKLRFYQSAFYQEL 123 Query: 151 NEVMTQRLRRAADDGLLIAVDPQFAATALIAVLSPDLYLYQQKLHNSTKEEISRGVLALF 210 + L ++ DD +F L+ LS ++ +Q + + + E +L ++ Sbjct: 124 FDFYYD-LFKSDDDTY-----TKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIY 177 Query: 211 VTGIQR 216 + ++R Sbjct: 178 LDEVER 183 >ref|NP_784619.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] emb|CAD63464.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] Length = 186 Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 6/182 (3%) Query: 31 QRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERFLSR 90 Q+IL AA LF +E VSM IA AGIG G+LYR + K +C AL++ F+ Sbjct: 10 QKILTAARQLFAARSIETVSMKDIATAAGIGPGTLYRHYAHKSTLCLALVTDRVATFIK- 68 Query: 91 LEQELQATTGASNSLEDLQSSIEQVVDFIDQHAELLQMIKSEFTGKKQLTQFEHPIFRRL 150 ++ TT + + I + + + + LL +++ G++Q Q E ++++L Sbjct: 69 -TNQVYLTTTSVGAAARFDHVIGEYLAIREHNMALLMNVEAGEPGRRQFYQSE--LYQQL 125 Query: 151 NEVMTQRLRRAADDGLLIAVDPQFAATALIAVLSPDLYLYQQKLHNSTKEEISRGVLALF 210 +++TQ +R L +F A LIA+L Y +Q++ ++ E+ + AL Sbjct: 126 CDLLTQLVRDLKPT--LSKPACEFQADMLIAMLKGTSYAFQRQWRGRSQSELLAQLHALM 183 Query: 211 VT 212 VT Sbjct: 184 VT 185 >ref|NP_768856.1| transcriptional regulatory protein [Bradyrhizobium japonicum] dbj|BAC47481.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 219 Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 31 QRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERFLSR 90 +R+LEAA+A+F G E S+ +AKRAG+G G+LYR F + ++ A+ E+ LS Sbjct: 26 ERVLEAAKAVFNAGGPE-ASLEAVAKRAGVGIGTLYRHFPTREDLFEAVYRREVEQ-LSE 83 Query: 91 LEQELQATTGASNSLEDLQSSIEQVVDFIDQHAELLQMIKSEFTGKKQLTQFEHPIFRRL 150 L ++L+ A +S++ L+ + V+F+ + + F +L F RL Sbjct: 84 LAEQLK---NAKDSVDALRRWLRSGVEFVATKKGMSAALALTFQSSSELAAFS---MDRL 137 Query: 151 NEVMTQRLRRAADDGLLIA-VDPQFAATALIAVLSPDLYLYQQKLHNSTKEEISRGVLAL 209 + + L RA G + A V P+ ALI + Y++ Q S+ + R +L + Sbjct: 138 TKAIGSLLDRAVAAGEMRADVSPEDLLRALIGM----CYMHDQPGWQSS---VLR-MLDV 189 Query: 210 FVTGIQ 215 FV G++ Sbjct: 190 FVDGLR 195 >ref|NP_827765.1| putative TetR-family transcriptional regulator [Streptomyces avermitilis MA-4680] dbj|BAC74300.1| putative TetR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 206 Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 13/166 (7%) Query: 30 IQRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERFLS 89 + RIL+A L +E G + +S +A RAG+ GS+YR F +K + AL + ER+ Sbjct: 23 LTRILDACADLLDEVGYDALSTRAVALRAGVPIGSVYRFFGNKRAMADALAERNFERYTD 82 Query: 90 RLEQELQATTGASNSLEDLQSSIEQVVD-FIDQHAELLQMIKSEFTGK----KQLTQFEH 144 R+ L+ + G D +++++ V+D ++D +F + + + H Sbjct: 83 RVTHRLEQSDGEG----DWRAAMDAVLDEYLDMKRTAPGFSLVDFGNQIPVGARYAEPNH 138 Query: 145 PIFRRLNEVMTQRLRRAADDGL----LIAVDPQFAATALIAVLSPD 186 + RL E+++ L R DD L LIAV+ L +SP+ Sbjct: 139 RVADRLTELLSAYLGRTPDDDLRRTFLIAVETADTLVHLAFRMSPE 184 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.132 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 284,529,156 Number of extensions: 10244919 Number of successful extensions: 39633 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 39757 Number of HSP's successfully gapped: 31 Length of query: 217 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 96 Effective length of database: 428,710,599 Effective search space: 41156217504 Effective search space used: 41156217504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)