BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0006.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349919.1| Amino acid ABC-type transporter, ATPase compone... 340 2e-92 emb|CAA54726.1| putative ATP binding subunit [Bacillus subtilis] 324 1e-87 gb|AAG24255.1| YckI [Bacillus subtilis] 323 2e-87 emb|CAE02640.1| YckI protein [Bacillus amyloliquefaciens] 322 5e-87 ref|NP_388241.1| similar to glutamine ABC transporter (ATP-bindi... 321 9e-87 >ref|NP_349919.1| Amino acid ABC-type transporter, ATPase component [Clostridium acetobutylicum] pir||H97308 amino acid ABC-type transporter, ATPase component CAC3327 [imported] - Clostridium acetobutylicum gb|AAK81259.1| Amino acid ABC-type transporter, ATPase component [Clostridium acetobutylicum] Length = 247 Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 158/246 (64%), Positives = 195/246 (79%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 MI I +LHKSFG ++LKG+DL V G+ VIIGPSGSGKTTLLRC NLLE P++GS+T+ Sbjct: 1 MITISNLHKSFGNTEILKGIDLNVNKGETTVIIGPSGSGKTTLLRCINLLETPNKGSITV 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 G+ ++F V+ LR++TGMVFQS+NLFPHMT L N+MEGQVTV KR+K EAR Sbjct: 61 GNSSIDFDNNNSFYTSDVINLRKKTGMVFQSFNLFPHMTVLQNIMEGQVTVLKRSKSEAR 120 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K+A+ LL KVGL++K D YPH+LSGGQQQRVAIARAMA++PEVLLFDEPTSALDPEL E Sbjct: 121 KKALLLLEKVGLSEKQDQYPHELSGGQQQRVAIARAMAMDPEVLLFDEPTSALDPELEAE 180 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKV+K+L+ EGMTM++VTH+M FA D A ++I MD G I+E G PE V +T+PR Q Sbjct: 181 VLKVMKELSNEGMTMIVVTHKMSFAKDAAHRVIFMDNGTIIEAGTPEHVFTASTNPRVKQ 240 Query: 241 FLNRLS 246 FLN +S Sbjct: 241 FLNIVS 246 >emb|CAA54726.1| putative ATP binding subunit [Bacillus subtilis] Length = 247 Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 155/245 (63%), Positives = 193/245 (78%), Gaps = 2/245 (0%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 M+ ++ L+KSFG ++LK +D+ +E GKV+ I+GPSGSGKTTLLRC N LE P+RG L Sbjct: 1 MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAF 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 D ++F+ K+ Q +L LR+++GMVFQ+Y+LFPH TAL NVMEG V VQKR KEE R Sbjct: 61 DDFSIDFSK--KVKQADILKLRRKSGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVR 118 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K AI+LL KVGL DK D YP QLSGGQQQRV IARA+A++PE++LFDEPTSALDPELVGE Sbjct: 119 KEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGE 178 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKVIK LA EG TMV+VTHE+KFA +VAD++I +DGGVI+EQG PEQ+ R + Sbjct: 179 VLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVIVEQGPPEQIFSAPKEERTQR 238 Query: 241 FLNRL 245 FLNR+ Sbjct: 239 FLNRI 243 >gb|AAG24255.1| YckI [Bacillus subtilis] Length = 247 Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 154/245 (62%), Positives = 193/245 (78%), Gaps = 2/245 (0%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 M+ ++ L+KSFG ++LK +D+ +E GKV+ I+GPSGSGKTTLLRC N LE P+RG L Sbjct: 1 MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAF 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 D ++F+ K+ Q +L LR+++GMVFQ+Y+LFPH TAL NVMEG V VQKR KEE R Sbjct: 61 DDFSIDFSK--KVKQSDILQLRRKSGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVR 118 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K AI+LL KVGL DK D YP QLSGGQQQRV IARA+A++PE++LFDEPTSALDPELVGE Sbjct: 119 KEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGE 178 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKVIK LA EG TMV+VTHE+KFA +VAD++I +DGGVI+EQG PE++ R + Sbjct: 179 VLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVIVEQGPPEEIFSAPKEERTQR 238 Query: 241 FLNRL 245 FLNR+ Sbjct: 239 FLNRI 243 >emb|CAE02640.1| YckI protein [Bacillus amyloliquefaciens] Length = 247 Score = 322 bits (825), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 153/245 (62%), Positives = 193/245 (78%), Gaps = 2/245 (0%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 M+ ++ L+KSFG ++LK +D+ +E GKV+ ++GPSGSGKTTLLRC N LE P+RG L Sbjct: 1 MLSVKGLNKSFGQNEILKKIDMEIEKGKVIAVLGPSGSGKTTLLRCLNALEIPNRGELAF 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 D ++F+ K+ Q +L LR+++GMVFQ+Y+LFPH TAL NVMEG V VQKR KE+ R Sbjct: 61 SDFSIDFSK--KVKQADILRLRRKSGMVFQAYHLFPHRTALENVMEGPVQVQKRDKEQVR 118 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K A+ELL KVGL DK D YP QLSGGQQQRV IARA+A++PE++LFDEPTSALDPELVGE Sbjct: 119 KEAMELLEKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGE 178 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKVIK LA EG TMV+VTHE+KFA +VAD++I +DGGVI+EQG PEQ+ R + Sbjct: 179 VLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVIVEQGPPEQIFSAPKEERTQR 238 Query: 241 FLNRL 245 FLNR+ Sbjct: 239 FLNRI 243 >ref|NP_388241.1| similar to glutamine ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P39456|YCKI_BACSU Probable amino-acid ABC transporter ATP-binding protein yckI pir||C69761 ABC-type transport protein yckI - Bacillus subtilis dbj|BAA08992.1| homologue of glutamine transport ATP-binding protein GlnQ of E. coli [Bacillus subtilis] emb|CAB12153.1| yckI [Bacillus subtilis subsp. subtilis str. 168] Length = 247 Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 154/245 (62%), Positives = 192/245 (78%), Gaps = 2/245 (0%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 M+ ++ L+KSFG ++LK +D+ +E GKV+ I+GPSGSGKTTLLRC N LE P+RG L Sbjct: 1 MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAF 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 D ++F+ K+ Q +L LR+++ MVFQ+Y+LFPH TAL NVMEG V VQKR KEE R Sbjct: 61 DDFSIDFSK--KVKQADILKLRRKSPMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVR 118 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K AI+LL KVGL DK D YP QLSGGQQQRV IARA+A++PE++LFDEPTSALDPELVGE Sbjct: 119 KEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGE 178 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKVIK LA EG TMV+VTHE+KFA +VAD++I +DGGVI+EQG PEQ+ R + Sbjct: 179 VLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVIVEQGPPEQIFSAPKEERTQR 238 Query: 241 FLNRL 245 FLNR+ Sbjct: 239 FLNRI 243 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 337,469,680 Number of extensions: 12646396 Number of successful extensions: 131954 Number of sequences better than 1.0e-05: 22359 Number of HSP's gapped: 98485 Number of HSP's successfully gapped: 24031 Length of query: 250 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 127 Effective length of database: 423,280,401 Effective search space: 53756610927 Effective search space used: 53756610927 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)