BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0068.p
         (55 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_982216.1| amino acid ABC transporter, permease protein [B...    95   6e-19
ref|NP_889332.1| putative ABC transporter permease protein [Bord...    60   1e-08
ref|ZP_00165719.1| hypothetical protein Raeut613801 [Ralstonia e...    53   2e-06
ref|NP_465265.1| similar to amino acid (glutamine) ABC transport...    53   3e-06

>ref|NP_982216.1| amino acid ABC transporter, permease protein [Bacillus cereus ATCC
           10987]
 gb|AAS45058.1| amino acid ABC transporter, permease protein [Bacillus cereus ATCC
           10987]
          Length = 219

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 53/55 (96%)

Query: 1   LLYAVAVPELLNYAKTAVNRDFTVTPFVVAGVIYLLMTLILTLFFKALEKRFKFE 55
           LLYAVAVPELL++A+TAVNRDFT+TPF VAG+IYL+MTL+LT+FFK LE+RFKFE
Sbjct: 165 LLYAVAVPELLHFAQTAVNRDFTITPFFVAGLIYLIMTLVLTMFFKWLERRFKFE 219


>ref|NP_889332.1| putative ABC transporter permease protein [Bordetella
           bronchiseptica RB50]
 emb|CAE33288.1| putative ABC transporter permease protein [Bordetella
           bronchiseptica]
          Length = 217

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 39/52 (75%)

Query: 1   LLYAVAVPELLNYAKTAVNRDFTVTPFVVAGVIYLLMTLILTLFFKALEKRF 52
           L+Y +A+ ++L  A+  V RDFT TPF+VA   YL+MTLILT FF+ +EKR+
Sbjct: 161 LIYVLALNDILRTARGIVQRDFTTTPFLVAAAFYLIMTLILTWFFQHMEKRY 212


>ref|ZP_00165719.1| hypothetical protein Raeut613801 [Ralstonia eutropha JMP134]
          Length = 40

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 29/35 (82%)

Query: 18 VNRDFTVTPFVVAGVIYLLMTLILTLFFKALEKRF 52
          + RDFT TPF+VA + YLLMTLILT FF+ LEKR+
Sbjct: 1  MQRDFTTTPFLVAALFYLLMTLILTWFFQNLEKRY 35


>ref|NP_465265.1| similar to amino acid (glutamine) ABC transporter, permease protein
           [Listeria monocytogenes EGD-e]
 pir||AD1292 amino acid (glutamine) ABC transporter, permease protein homolog
           lmo1740 [imported] - Listeria monocytogenes (strain
           EGD-e)
 emb|CAC99818.1| lmo1740 [Listeria monocytogenes]
          Length = 213

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 1   LLYAVAVPELLNYAKTAVNRDFTVTPFVVAGVIYLLMTLILTLFFKALEKRFKF 54
           L+Y + + +LL   K A++RD T+ P V+   IYL +T ILT+ FK LEKRF +
Sbjct: 158 LVYILGIGDLLRAGKIAMSRDVTLIPLVLVAAIYLALTAILTVLFKQLEKRFSY 211


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.333    0.146    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 68,859,962
Number of extensions: 1810093
Number of successful extensions: 12662
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 12728
Number of HSP's successfully gapped: 10
Length of query: 55
Length of database: 757,237,578
Length adjustment: 27
Effective length of query: 28
Effective length of database: 683,929,905
Effective search space: 19150037340
Effective search space used: 19150037340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 120 (50.8 bits)