BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0067.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_982217.1| amino acid ABC transporter, ATP-binding protein... 334 1e-90 ref|NP_350201.1| ABC-type polar amino acid transport system, ATP... 286 4e-76 ref|NP_346757.1| Glutamine ABC transporter (ATP-binding protein)... 284 1e-75 ref|NP_471684.1| similar to amino acid ABC transporter (ATP-bind... 277 2e-73 ref|NP_465775.1| similar to amino acid ABC transporter (ATP-bind... 277 2e-73 >ref|NP_982217.1| amino acid ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS45059.1| amino acid ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 248 Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 156/243 (64%), Positives = 202/243 (83%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 +IE+ L+KS+G+LDVLK+I+F +N +V+AVIGPSGSGKSTMLRSLV+LEE+ GSI + Sbjct: 3 IIEISNLKKSYGNLDVLKRISFDINKNDVIAVIGPSGSGKSTMLRSLVYLEELDNGSICV 62 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 G L+++G YA +IR+IT MGMVFQHFNLFPHL+V+ NLELAP+ LK+ +I Sbjct: 63 SGDYLVKDGVYAIPQEIRQITGKMGMVFQHFNLFPHLTVKENLELAPKMLKKELSADIHQ 122 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 +S ELL ++GL+D+A+ YP+ LSGGQKQRVAIARALM+NP+ +LFDEPTSALDPELTGEV Sbjct: 123 RSGELLERIGLSDRANAYPANLSGGQKQRVAIARALMMNPEFMLFDEPTSALDPELTGEV 182 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L+V++ LA+E MTMI+VTHEM FA++VA++V FMDNGEI ESG P +F +P+ ERT+ F Sbjct: 183 LQVMKDLAQEQMTMIVVTHEMGFAKEVANKVIFMDNGEIVESGNPTDLFMNPKFERTKAF 242 Query: 241 LNR 243 LNR Sbjct: 243 LNR 245 >ref|NP_350201.1| ABC-type polar amino acid transport system, ATPase component [Clostridium acetobutylicum] pir||B97344 ABC-type polar amino acid transport system, ATPase component CAC3618 [imported] - Clostridium acetobutylicum gb|AAK81541.1| ABC-type polar amino acid transport system, ATPase component [Clostridium acetobutylicum] Length = 243 Score = 286 bits (731), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 140/243 (57%), Positives = 176/243 (72%), Gaps = 4/243 (1%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 MIE + L K+FG L V + + ++ GEV+ +IGPSGSGKST LR L HLEE GG + I Sbjct: 3 MIEAKNLTKTFGKLTVFEDLNVNISKGEVLVIIGPSGSGKSTFLRCLNHLEEPNGGQVII 62 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 G+ L + REI GMVFQ +NLFPH++V N+ AP T+K+ N E+ Sbjct: 63 EGEVL----NHKDKKKYREIIEKTGMVFQSYNLFPHMTVLQNVMEAPITVKKENKSEVRK 118 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 +++ LL KVGL+DK +VYPS LSGGQKQRVAIARAL + PDI+LFDEPTSALDPEL GEV Sbjct: 119 RAEALLYKVGLSDKMNVYPSKLSGGQKQRVAIARALCMQPDIMLFDEPTSALDPELVGEV 178 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L V+++LAEE MTM++VTHEM FAR+VADRV FMD G+I E PE IF +P+ ERT+ F Sbjct: 179 LSVMKELAEEGMTMVVVTHEMGFAREVADRVIFMDGGKIVEENTPEGIFTNPKEERTKEF 238 Query: 241 LNR 243 LN+ Sbjct: 239 LNK 241 >ref|NP_346757.1| Glutamine ABC transporter (ATP-binding protein) [Clostridium acetobutylicum] pir||F96913 glutamine ABC transporter (ATP-binding protein) CAC0112 [imported] - Clostridium acetobutylicum gb|AAK78097.1| Glutamine ABC transporter (ATP-binding protein) [Clostridium acetobutylicum] Length = 245 Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 138/242 (57%), Positives = 179/242 (73%), Gaps = 5/242 (2%) Query: 2 IEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYIH 61 IEV++L+KS+GS +VLK+I ++ EVV +IGPSGSGKST+LR + LEE+T G + I Sbjct: 7 IEVKELKKSYGSNEVLKEINLTIDRSEVVCIIGPSGSGKSTLLRCMNRLEEITAGQLMID 66 Query: 62 GKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAAK 121 GK + + N +I ++ +GMVFQHFNLFPHLSV N+ AP L + + +E Sbjct: 67 GKDISDK-----NINIDKLRENVGMVFQHFNLFPHLSVLKNITFAPIELNKMSKEEAEKT 121 Query: 122 SKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEVL 181 + +LL KVGL DKA+ YP LSGGQKQRVAIARAL +NPDI+LFDEPTSALDPE+ GEVL Sbjct: 122 AFKLLDKVGLNDKANTYPDKLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVGEVL 181 Query: 182 RVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTFL 241 V++ LA+E MTM++VTHEM FAR+VADRV FM +G I E G P+ IF +P +RT+ FL Sbjct: 182 GVMKDLAKEGMTMVVVTHEMGFAREVADRVIFMADGYIVEQGTPDDIFKNPTQDRTKDFL 241 Query: 242 NR 243 N+ Sbjct: 242 NK 243 >ref|NP_471684.1| similar to amino acid ABC transporter (ATP-binding protein) [Listeria innocua] pir||AD1726 amino acid ABC transporter (ATP-binding protein) homolog lin2353 [imported] - Listeria innocua (strain Clip11262) emb|CAC97580.1| lin2353 [Listeria innocua] Length = 241 Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 140/243 (57%), Positives = 173/243 (71%), Gaps = 5/243 (2%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 MI ++ L K FG L+VLK I + GEVV VIGPSGSGKST LR L LE+ T G+I Sbjct: 1 MINIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFLRCLNLLEQPTTGTILF 60 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 K L+ A T++ E+ MGMVFQ+FNLFPH +V NL LAP +K + Sbjct: 61 ENKDLM-----AKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAPMKVKNEDSTAAKE 115 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 + LL KVGLADKA YPS LSGGQ+QRVAIARAL +NPD++LFDEPTSALDPE+ GEV Sbjct: 116 HALSLLEKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEV 175 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L V++ LA+E MTM++VTHEM FAR+VADRV FMD G I E G PE++FG+P+ +RT+ F Sbjct: 176 LSVMKSLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQGTPEEVFGNPQNDRTKDF 235 Query: 241 LNR 243 L + Sbjct: 236 LGK 238 >ref|NP_465775.1| similar to amino acid ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AC1356 amino acid ABC transporter (ATP-binding protein) homolog lmo2251 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00329.1| lmo2251 [Listeria monocytogenes] Length = 241 Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 140/243 (57%), Positives = 173/243 (71%), Gaps = 5/243 (2%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 MI ++ L K FG L+VLK I + GEVV VIGPSGSGKST LR L LE+ T G+I Sbjct: 1 MINIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFLRCLNLLEQPTTGTILF 60 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 K L+ A T++ E+ MGMVFQ+FNLFPH +V NL LAP +K + Sbjct: 61 ENKDLM-----AKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAPMKVKNEDSAAAKK 115 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 + LL KVGLADKA YPS LSGGQ+QRVAIARAL +NPD++LFDEPTSALDPE+ GEV Sbjct: 116 HALSLLEKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEV 175 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L V++ LA+E MTM++VTHEM FAR+VADRV FMD G I E G PE++FG+P+ +RT+ F Sbjct: 176 LSVMKSLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQGTPEEVFGNPQNDRTKDF 235 Query: 241 LNR 243 L + Sbjct: 236 LGK 238 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 353,571,417 Number of extensions: 14285271 Number of successful extensions: 131773 Number of sequences better than 1.0e-05: 23062 Number of HSP's gapped: 97230 Number of HSP's successfully gapped: 24930 Length of query: 244 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 122 Effective length of database: 425,995,500 Effective search space: 51971451000 Effective search space used: 51971451000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)