BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0063.p (1033 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00060097.1| hypothetical protein [Clostridium thermocellu... 132 5e-29 ref|NP_832550.1| Chitin binding protein [Bacillus cereus ATCC 14... 101 9e-20 ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella th... 96 5e-18 sp|P50899|GUXB_CELFI Exoglucanase B precursor (Exocellobiohydrol... 94 2e-17 gb|AAG24953.1| XalA [Paenibacillus alginolyticus] 93 4e-17 >ref|ZP_00060097.1| hypothetical protein [Clostridium thermocellum ATCC 27405] pir||JC6031 scaffoldin dockerin binding protein precursor - Clostridium thermocellum gb|AAB07763.1| SdbA Length = 631 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 98/336 (29%), Positives = 160/336 (47%), Gaps = 38/336 (11%) Query: 686 ADILLRADTLREFGNASMLELFFGKASQVKQSGIGDAAAGWAYSPAYQLLLKLDGQPV-- 743 A++L AD + N S++E K +V + G + P + + +DG+ V Sbjct: 326 ANMLNTADISKLVKNDSVVEFVIRKV-KVDELG-AELKEKIGNRPVIDISVVVDGKKVEW 383 Query: 744 STVKNGVLLELGYALKPD----QQPGKVVAYTLLDDGTPQIVRYGRYDPSFDKLTFQLQT 799 S K V + + Y KPD + +V + D G V G+Y+PS +TF+ Sbjct: 384 SNYKAKVKISIPY--KPDAKELENHEHIVVLHIDDAGKAVSVPSGKYEPSLGVVTFETNH 441 Query: 800 LQPFGAAYHELSFSDIGTVPWAKESIEELAAKGMLRGPGNGRFAPEAEITRAEFAMLLMN 859 L + +Y +F+DIG+ WAK+ IE LA+KG++ G + F P+A+ITRA+F +LL+ Sbjct: 442 LSKYAVSYVYKTFADIGSYAWAKKQIEVLASKGVINGTSDTTFTPQADITRADFMILLVK 501 Query: 860 IFDLADAIPXXXXXXXXXXXXXXXXXXKQTAEKLGHRKLTDMDNSAWYYQAVTAAQLLGI 919 L TAE + D+ +YY+ V A+ LGI Sbjct: 502 ALGL-------------------------TAEVTSN--FDDVSEKDYYYEYVGIAKELGI 534 Query: 920 AEGRTDGSFGVNDPISRQELAVMVYRLIPVAGLNGMYMQKAPEEVFSDESSIAGYARESV 979 G + F I+RQ++ V+ + +AG +A E FSD+ IA YA E V Sbjct: 535 TTGVGNNKFNPKAKITRQDMMVLTTNALRIAGKISSTGTRADVERFSDKDQIASYAVEGV 594 Query: 980 ISLQRAGLLQGTAQGMFKPRSGTTRAEAAVLLHRLY 1015 +L + G++ G+ + PR +RAE A +++++Y Sbjct: 595 ATLVKEGIVVGSGD-IINPRGNASRAELAAIIYKIY 629 >ref|NP_832550.1| Chitin binding protein [Bacillus cereus ATCC 14579] gb|AAP09751.1| Chitin binding protein [Bacillus cereus ATCC 14579] Length = 455 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 116/239 (48%), Gaps = 27/239 (11%) Query: 27 DKEAPSTPAGLEVAIERRTSVDLRWNQATDAGSGIKGYRVSYADGTFIADTFGTSYSISG 86 D EAPS P GL+ SV+L WN +TD G+KGY++ + +G I GT + Sbjct: 216 DIEAPSIPNGLQTQKVTANSVELTWNASTD-NVGVKGYQI-FRNGEMIDTVIGTHFIDKK 273 Query: 87 LTPETEYAFQVQALDYAGNVSAASAHVRAVTKGE--DREAPALPQGLRVTDTSASRIMLE 144 L P TEY++ V+A+D AGNVS S + T E D EAP P+GL T+AS + L Sbjct: 274 LQPSTEYSYTVKAIDAAGNVSKESTALTVKTTVEIPDTEAPTQPKGLHSMGTTASSVDLM 333 Query: 145 WQ-ANTEPDLMGYNLYRGTAADFTPDASNKIASLLTSNSYADRSGIEEKRTYYYKLEAVD 203 W ++ + Y++YR T A++ AS + N A+ TY Y ++AVD Sbjct: 334 WSPSDDNIGVDHYDIYRETEGSMKKIATSNTASYMDKNLLAN-------TTYKYVVKAVD 386 Query: 204 SSGNSSGSTAPVQAVTPADERLDIIVDNRDSGFASDGQWTSSSWSASRFGTDYLHDGNV 262 +GN S VQ+ DI + AS W + A + G LH+G V Sbjct: 387 VAGNES-----VQS--------DIFTITTKTESASYEAWDAK--KAYKKGDRVLHEGKV 430 >ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella thermoacetica ATCC 39073] Length = 308 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 89/319 (27%), Positives = 134/319 (42%), Gaps = 66/319 (20%) Query: 731 AYQLLLKLDGQ------PVSTVKNGVLLELG-YALKPDQQ----PGKVVAYTL------L 773 A+Q+L + Q P S + ++E+ Y +K D Q P K V TL + Sbjct: 17 AFQVLDTTEAQAVTGNLPASMRQAADVIEIDLYTVKGDNQQMVTPAKPVTLTLTYRPEGV 76 Query: 774 DDGTPQIVRY-----------GRYDPSFDKLTFQLQTLQPFGAAYHELSFSDIGTVPWAK 822 D + RY GR D + + ++ L + + ++ +FSDI WA+ Sbjct: 77 DADKLGVYRYNVAAGTWEYKGGRVDKATNSISAVLNSFSKYTVLAYDKTFSDIQG-HWAQ 135 Query: 823 ESIEELAAKGMLRGPGNGRFAPEAEITRAEFAMLLMNIFDLADAIPXXXXXXXXXXXXXX 882 IE +AA+ + G F PE ++TRAEF L+ +++ Sbjct: 136 RDIEIMAARHVAAGISASEFKPEGQVTRAEFTAFLLRTLGISE----------------- 178 Query: 883 XXXXKQTAEKLGHRKLTDMDNSAWYYQAVTAAQLLGIAEGRTDGSFGVNDPISRQELAVM 942 ++ + D+ WYY AV A G+ G DGSF + ISRQE+A M Sbjct: 179 --------DRSAANRFADIQPGDWYYGAVVTASRTGLVAGYEDGSFRPDKAISRQEMAAM 230 Query: 943 VY-------RLIPVAGLNGMYMQKAPEEVFSDESSIAGYARESVISLQRAGLLQGTAQGM 995 + + + VAG + K FSD S+A +ARES +GL+ G Sbjct: 231 LARALAYAGQKVDVAGRVDDILSK-----FSDNGSLASWARESAAVAVESGLIVGRTATT 285 Query: 996 FKPRSGTTRAEAAVLLHRL 1014 F P TRAE V+L RL Sbjct: 286 FVPLGNATRAETVVMLKRL 304 >sp|P50899|GUXB_CELFI Exoglucanase B precursor (Exocellobiohydrolase B) (1,4-beta-cellobiohydrolase B) (CBP120) pir||S59077 cellulose 1,4-beta-cellobiosidase (EC 3.2.1.91) precursor - Cellulomonas fimi gb|AAB00822.1| beta-1,4-cellobiohydrolase Length = 1090 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 21/202 (10%) Query: 26 NDKEAPSTPAGLEVAIERRTSVDLRWNQATD--AGSGIKGYRVSYADGTFIADTFGTSYS 83 +D APS PA + + SV + W+ +TD GSG+ GY V Y T +A T +++ Sbjct: 793 SDTTAPSVPA-ITSSSSTANSVTIGWSASTDNAGGSGLAGYDV-YRGATRVAQTTALTFT 850 Query: 84 ISGLTPETEYAFQVQALDYAGNVSAASAHVRAVTKGE---DREAPALPQGLRVTDTSASR 140 +GLT T Y + V+A D AGNVSA S V TK + D AP++P GL + + Sbjct: 851 DTGLTASTAYEYTVRARDVAGNVSAPSTAVSVTTKSDTTPDTTAPSVPAGLAAMTVTETS 910 Query: 141 IMLEWQANTE---PDLMGYNLYRGTAADFTPDASNKIASLLTSNSYADRSGIEEKRTYYY 197 + L W A+T+ L GY++YRG + ++ S T+ SY D +G+ Y Y Sbjct: 911 VALTWNASTDTGGSGLKGYDVYRG---------ATRVGSTTTA-SYTD-TGLTAATAYQY 959 Query: 198 KLEAVDSSGNSSGSTAPVQAVT 219 + A D++GN S ++A + T Sbjct: 960 TVRATDNAGNVSAASAALSVTT 981 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/93 (50%), Positives = 55/93 (59%), Gaps = 2/93 (2%) Query: 27 DKEAPSTPAGLEVAIERRTSVDLRWNQATD-AGSGIKGYRVSYADGTFIADTFGTSYSIS 85 D APS PAGL TSV L WN +TD GSG+KGY V Y T + T SY+ + Sbjct: 891 DTTAPSVPAGLAAMTVTETSVALTWNASTDTGGSGLKGYDV-YRGATRVGSTTTASYTDT 949 Query: 86 GLTPETEYAFQVQALDYAGNVSAASAHVRAVTK 118 GLT T Y + V+A D AGNVSAASA + TK Sbjct: 950 GLTAATAYQYTVRATDNAGNVSAASAALSVTTK 982 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 20/209 (9%) Query: 36 GLEVAIERRTSVDLRWNQATDAGSGIKGYRVSYADGTFIADTFGTSYSISGLTPETEYAF 95 GL+ + T + W +TD + + GY V Y T + TS++ +GLT T YA+ Sbjct: 709 GLQAGVVTSTEATISWTASTD-DTRVTGYDV-YRGATKVGTATTTSFTDTGLTASTAYAY 766 Query: 96 QVQALDYAGNVSAASAHVRAVTKG--EDREAPALPQGLRVTDTSASRIMLEWQANTE--- 150 V+A D AGNVSA SA + TK D AP++P + + ++A+ + + W A+T+ Sbjct: 767 TVRAFDAAGNVSAPSAALTVTTKATPSDTTAPSVP-AITSSSSTANSVTIGWSASTDNAG 825 Query: 151 -PDLMGYNLYRGTAADFTPDASNKIASLLTSNSYADRSGIEEKRTYYYKLEAVDSSGNSS 209 L GY++YRG + ++A T+ ++ D +G+ Y Y + A D +GN S Sbjct: 826 GSGLAGYDVYRG---------ATRVAQ-TTALTFTD-TGLTASTAYEYTVRARDVAGNVS 874 Query: 210 GSTAPVQAVTPADERLDIIVDNRDSGFAS 238 + V T +D D + +G A+ Sbjct: 875 APSTAVSVTTKSDTTPDTTAPSVPAGLAA 903 >gb|AAG24953.1| XalA [Paenibacillus alginolyticus] Length = 936 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 74/129 (57%), Gaps = 4/129 (3%) Query: 228 IVDNRDSGFASDGQWTSSSWSASRFGTDYLHDGNVA--GKWAKWTPYVTVPGQYNVYMLW 285 IVDN SG G WT++S + ++ T+Y+HD N K TP +T G YNVYM W Sbjct: 805 IVDNAGSGVTKVGSWTTASTATDKYLTNYVHDSNTGQGTKSVTLTPTLTGAGNYNVYMWW 864 Query: 286 NASPNRGYNLPLEITHEGGKDTAPRIHQTNNDNMWVYIGTYTLAAGTGNSVKLTTNGTNT 345 A NR N+P++I ++GG T I+Q N W IGT+ AAG+G VK+ +G N Sbjct: 865 PAHANRATNIPVDIGYDGGSTTVT-INQQLNGGQWNLIGTFPFAAGSGGYVKVRNDGANG 923 Query: 346 TV-ADAVKF 353 V DAVKF Sbjct: 924 YVTVDAVKF 932 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.130 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,542,357,828 Number of extensions: 66276174 Number of successful extensions: 133637 Number of sequences better than 1.0e-05: 178 Number of HSP's gapped: 133764 Number of HSP's successfully gapped: 204 Length of query: 1033 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 897 Effective length of database: 387,984,114 Effective search space: 348021750258 Effective search space used: 348021750258 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)