BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0054.p
         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_657087.1| beta-lactamase, Beta-lactamase [Bacillus anthra...    67   1e-10
ref|NP_832928.1| Penicillin-binding protein [Bacillus cereus ATC...    65   5e-10
ref|NP_349412.1| Beta-lactamase class C domain (PBPX family) con...    55   3e-07

>ref|NP_657087.1| beta-lactamase, Beta-lactamase [Bacillus anthracis A2012]
 ref|NP_845523.1| penicillin-binding protein, putative [Bacillus anthracis str. Ames]
 gb|AAP27009.1| penicillin-binding protein, putative [Bacillus anthracis str. Ames]
          Length = 691

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%)

Query: 1   VNPIYGGGTSICTIEDNGHAVWFKIDAKSAAKTMRVEVPSSGGVIVYDGKGMPVYSSIVN 60
           V  +  G  S  T++ +GHA WF I  ++A KTM VE+PS     VYD  G+ V  S+V+
Sbjct: 604 VKSLDTGQLSKVTLQKSGHAKWFTIPQEAAGKTMNVELPSGSSFAVYDENGVCVNFSVVS 663

Query: 61  KDKSVVLPEGGMIVFGGEAGDVFQINM 87
            +  V LPE G +VF G     F + +
Sbjct: 664 NNNKVKLPENGTVVFAGAPNSEFTVAL 690


>ref|NP_832928.1| Penicillin-binding protein [Bacillus cereus ATCC 14579]
 gb|AAP10129.1| Penicillin-binding protein [Bacillus cereus ATCC 14579]
          Length = 695

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 49/87 (56%)

Query: 1   VNPIYGGGTSICTIEDNGHAVWFKIDAKSAAKTMRVEVPSSGGVIVYDGKGMPVYSSIVN 60
           V PI  G +S  T+  NGHA WF I   +  K M V +PS+G   VYD KG+ V  +IV+
Sbjct: 608 VKPIDVGQSSKVTLGANGHAKWFTIPQAATDKRMTVTLPSNGSFAVYDEKGVCVNFTIVS 667

Query: 61  KDKSVVLPEGGMIVFGGEAGDVFQINM 87
            +  V LP+ G IVF G     F I++
Sbjct: 668 GNNKVELPKNGTIVFAGAPKSEFAISV 694


>ref|NP_349412.1| Beta-lactamase class C domain (PBPX family) containing protein
           [Clostridium acetobutylicum]
 pir||E97245 beta-lactamase class C domain (PBPX family) containing protein
           [imported] - Clostridium acetobutylicum
 gb|AAK80752.1| Beta-lactamase class C domain (PBPX family) containing protein
           [Clostridium acetobutylicum]
          Length = 739

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query: 8   GTSICTIEDNGHAVWFKIDAKSAAKTMRVEVPSSGGVIVYDGKGMPVYSSIVNKDKSVVL 67
           GT   TI  +G+A W+KI  ++A K + V++P +    VYD  G  +  S+V    S  L
Sbjct: 655 GTFSSTINKDGYAEWYKIGDEAAGKEINVDIPQNAAFAVYDSNGAVINDSLVTGSTSAKL 714

Query: 68  PEGGMIVFGGEAGDVFQI 85
           P+ G IVF G     F I
Sbjct: 715 PQNGTIVFLGSPQAKFTI 732


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 152,031,435
Number of extensions: 5844286
Number of successful extensions: 16440
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 16440
Number of HSP's successfully gapped: 3
Length of query: 89
Length of database: 757,237,578
Length adjustment: 58
Effective length of query: 31
Effective length of database: 599,761,836
Effective search space: 18592616916
Effective search space used: 18592616916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 120 (50.8 bits)