BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0043.p
         (37 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_979744.1| transcriptional regulator, DeoR family [Bacillu...    56   3e-07
ref|NP_833168.1| Transcriptional regulator, DeoR family [Bacillu...    54   1e-06

>ref|NP_979744.1| transcriptional regulator, DeoR family [Bacillus cereus ATCC 10987]
 gb|AAS42352.1| transcriptional regulator, DeoR family [Bacillus cereus ATCC 10987]
          Length = 318

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 1   VAEITNWLLFLGGDIRVREVPEEILEGLQERIRLYCP 37
           V E+TNWLLFLG DI ++E+PEE+L+ LQER+ LY P
Sbjct: 282 VTEMTNWLLFLGKDITIKEMPEEVLKDLQERLCLYTP 318


>ref|NP_833168.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC 14579]
 gb|AAP10369.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC 14579]
          Length = 320

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 1   VAEITNWLLFLGGDIRVREVPEEILEGLQERIRLYCP 37
           V EI NWLLFLG DI+++E+P+E+L  LQ+R+ LY P
Sbjct: 284 VTEIINWLLFLGKDIKIKEIPDEVLADLQKRVCLYIP 320


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.149    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 54,836,463
Number of extensions: 1095532
Number of successful extensions: 2900
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2900
Number of HSP's successfully gapped: 2
Length of query: 37
Length of database: 757,237,578
Length adjustment: 11
Effective length of query: 26
Effective length of database: 727,371,489
Effective search space: 18911658714
Effective search space used: 18911658714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)