BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0038.p (93 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389764.1| phosphoenolpyruvate synthase [Bacillus subtilis... 174 6e-43 ref|NP_347173.1| Phosphoenolpyruvate synthase (gene pps) [Clostr... 174 6e-43 ref|NP_979439.1| phosphoenolpyruvate synthase [Bacillus cereus A... 172 2e-42 ref|NP_832830.1| Phosphoenolpyruvate synthase [Bacillus cereus A... 172 3e-42 ref|NP_469777.1| similar to phosphoenolpyruvate synthase [Lister... 171 5e-42 >ref|NP_389764.1| phosphoenolpyruvate synthase [Bacillus subtilis] pir||F69681 phosphoenolpyruvate synthase pps - Bacillus subtilis gb|AAB84457.1| PEP synthase [Bacillus subtilis] emb|CAB13775.1| phosphoenolpyruvate synthase [Bacillus subtilis subsp. subtilis str. 168] Length = 866 Score = 174 bits (441), Expect = 6e-43, Method: Composition-based stats. Identities = 84/93 (90%), Positives = 89/93 (95%) Query: 1 VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60 VIEGRARVI+NME ADLE+GDILVT+FTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY Sbjct: 774 VIEGRARVILNMEDADLEDGDILVTSFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 833 Query: 61 GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93 GLPAVVGVENA +LI DGQRIRV+GTEGYIEI Sbjct: 834 GLPAVVGVENAAKLIKDGQRIRVHGTEGYIEIF 866 >ref|NP_347173.1| Phosphoenolpyruvate synthase (gene pps) [Clostridium acetobutylicum] pir||F96965 phosphoenolpyruvate synthase (gene pps) [imported] - Clostridium acetobutylicum gb|AAK78513.1| Phosphoenolpyruvate synthase (gene pps) [Clostridium acetobutylicum] Length = 868 Score = 174 bits (441), Expect = 6e-43, Method: Composition-based stats. Identities = 83/93 (89%), Positives = 90/93 (96%) Query: 1 VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60 VIEGRARVI+NME A+LE GDILVT+FTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY Sbjct: 776 VIEGRARVILNMEDANLEAGDILVTSFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 835 Query: 61 GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93 GLPAV+GVENAT+LI DGQ+IRVNGTEGY+EIL Sbjct: 836 GLPAVIGVENATKLIKDGQQIRVNGTEGYVEIL 868 >ref|NP_979439.1| phosphoenolpyruvate synthase [Bacillus cereus ATCC 10987] gb|AAS42047.1| phosphoenolpyruvate synthase [Bacillus cereus ATCC 10987] Length = 868 Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 83/93 (89%), Positives = 89/93 (95%) Query: 1 VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60 VIEGRARVI+NME A+LEEGDILVT FTDP WTPLFVSIKGLVTEVGGLMTHGAVIAREY Sbjct: 776 VIEGRARVILNMEEANLEEGDILVTAFTDPGWTPLFVSIKGLVTEVGGLMTHGAVIAREY 835 Query: 61 GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93 GLPAVVGVENAT+LI DGQ+IRV+GTEGYIE+L Sbjct: 836 GLPAVVGVENATKLIKDGQQIRVHGTEGYIEVL 868 >ref|NP_832830.1| Phosphoenolpyruvate synthase [Bacillus cereus ATCC 14579] gb|AAP10031.1| Phosphoenolpyruvate synthase [Bacillus cereus ATCC 14579] Length = 868 Score = 172 bits (435), Expect = 3e-42, Method: Composition-based stats. Identities = 82/93 (88%), Positives = 89/93 (95%) Query: 1 VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60 V+EGRARVI+NME A+LE+GDILVT FTDP WTPLFVSIKGLVTEVGGLMTHGAVIAREY Sbjct: 776 VVEGRARVILNMEDANLEDGDILVTAFTDPGWTPLFVSIKGLVTEVGGLMTHGAVIAREY 835 Query: 61 GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93 GLPAVVGVENAT+LI DGQRIRV+GTEGYIE+L Sbjct: 836 GLPAVVGVENATKLIKDGQRIRVHGTEGYIEVL 868 >ref|NP_469777.1| similar to phosphoenolpyruvate synthase [Listeria innocua] pir||AI1486 phosphoenolpyruvate synthase homolog lin0432 [imported] - Listeria innocua (strain Clip11262) emb|CAC95665.1| lin0432 [Listeria innocua] Length = 866 Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 80/93 (86%), Positives = 88/93 (94%) Query: 1 VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60 V+EGRARVI+NME ADLE+GDILVT FTDPSWTP FVSIKGL+TEVGGLMTHGAVIAREY Sbjct: 773 VVEGRARVILNMEKADLEDGDILVTAFTDPSWTPAFVSIKGLITEVGGLMTHGAVIAREY 832 Query: 61 GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93 GLPAVVGVENAT++I DG RIR+NGTEGYIE+L Sbjct: 833 GLPAVVGVENATKIIQDGARIRINGTEGYIELL 865 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.140 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 130,756,551 Number of extensions: 4421044 Number of successful extensions: 14810 Number of sequences better than 1.0e-05: 223 Number of HSP's gapped: 14875 Number of HSP's successfully gapped: 223 Length of query: 93 Length of database: 757,237,578 Length adjustment: 61 Effective length of query: 32 Effective length of database: 591,616,539 Effective search space: 18931729248 Effective search space used: 18931729248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)