BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0034.p (159 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691279.1| two-component sensor histidine kinase [Oceanoba... 197 5e-50 ref|ZP_00060007.1| COG0642: Signal transduction histidine kinase... 173 9e-43 ref|NP_782041.1| sensor protein resE [Clostridium tetani E88] >g... 140 8e-33 ref|NP_782494.1| sensor protein resE [Clostridium tetani E88] >g... 127 1e-28 ref|NP_347164.1| Sensory transduction histidine kinase (HisKA an... 119 2e-26 >ref|NP_691279.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] dbj|BAC12314.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] Length = 333 Score = 197 bits (502), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 95/159 (59%), Positives = 119/159 (74%) Query: 1 MDAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVIN 60 MDA TI F +RI V +LI + + P+ IPM++K G+ +V+F GD NWT EA+IN Sbjct: 175 MDAGTIPFAMERIFVSDLIDEVIAPLEIPMELKDIDFQKFGNREVTFLGDSNWTKEALIN 234 Query: 61 ILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEGSI 120 I+KN +EHT EG ITI F EN L+TEI++ D GKGIPK+D+PYIFKRFYKG NA +GS+ Sbjct: 235 IMKNAIEHTPEGEHITIHFQENALYTEIIVQDTGKGIPKQDIPYIFKRFYKGGNATDGSV 294 Query: 121 GIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYKQVI 159 GIGLAMAHSI+ +Q G I+V S GKGT F +KFYKQVI Sbjct: 295 GIGLAMAHSIVTNQQGDIEVVSEEGKGTTFTLKFYKQVI 333 >ref|ZP_00060007.1| COG0642: Signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 357 Score = 173 bits (439), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 78/159 (49%), Positives = 115/159 (72%) Query: 1 MDAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVIN 60 +DA+ ++F++ + V L+++A+EP+ IPM++K Q + + + + +F GD +W+VEA+ N Sbjct: 199 IDAEVVRFQRKTVSVAELVRRAIEPIAIPMELKEQQIDVFMEGNETFIGDLSWSVEAIGN 258 Query: 61 ILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEGSI 120 ILKN +EHT +GG I I EN +FTEI I DNG GI +EDLP++F+RFYKGKN+GE S+ Sbjct: 259 ILKNCMEHTPKGGRIVIKACENAIFTEIEITDNGPGIDREDLPHLFERFYKGKNSGEHSM 318 Query: 121 GIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYKQVI 159 GIGLA+A II SQNG I + G +F ++FYK V+ Sbjct: 319 GIGLALARMIIVSQNGTIKAQNNHDGGAKFTVRFYKGVV 357 >ref|NP_782041.1| sensor protein resE [Clostridium tetani E88] gb|AAO35978.1| sensor protein resE [Clostridium tetani E88] Length = 417 Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 103/161 (63%), Gaps = 2/161 (1%) Query: 1 MDAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGD-DDVSFAGDFNWTVEAVI 59 ++A+ I F+K N IQ AL + D K Q + ++G+ D+V F D WT+EA++ Sbjct: 257 LEAQAINFEKRNTLGINFIQDALSSLKFKSDAKHQKIMVSGNLDNVYFYVDEQWTIEAIL 316 Query: 60 NILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEG- 118 NI+KN +EHT EGG I + SE LF+ I+I DNG+GI K+DLP+IF+RFYKG N+ Sbjct: 317 NIIKNCIEHTKEGGEIKVHISETPLFSRILIEDNGEGIDKKDLPHIFERFYKGSNSVNAE 376 Query: 119 SIGIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYKQVI 159 S+GIGLA+ II Q G I V S G G++F I F K +I Sbjct: 377 SVGIGLALTKVIIERQGGTILVNSKKGIGSKFTITFLKGII 417 >ref|NP_782494.1| sensor protein resE [Clostridium tetani E88] gb|AAO36431.1| sensor protein resE [Clostridium tetani E88] Length = 339 Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 88/156 (56%) Query: 1 MDAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVIN 60 +DA + F+ ++I V NLI AL P +IPM++ + I + GD W EA+ N Sbjct: 184 LDAGIVVFQSEQINVNNLICAALRPFLIPMELHDIDLQIDAPKGMIIQGDSGWLSEAIQN 243 Query: 61 ILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEGSI 120 ILKN VE E G I I ++N LFTEI I D+G G KEDLP +F RFY+GKN Sbjct: 244 ILKNCVESAGENGKIEIVCTDNPLFTEIAIHDSGTGFEKEDLPCLFDRFYRGKNPNATGY 303 Query: 121 GIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYK 156 GIGLA+ II Q G++ + G F I+F K Sbjct: 304 GIGLALCKMIITRQGGMVTTKNHPQGGAIFAIRFPK 339 >ref|NP_347164.1| Sensory transduction histidine kinase (HisKA and HATPase_c domains) [Clostridium acetobutylicum] pir||E96964 sensory transduction histidine kinase (HisKA and HATPase_c domains) [imported] - Clostridium acetobutylicum gb|AAK78504.1| Sensory transduction histidine kinase (HisKA and HATPase_c domains) [Clostridium acetobutylicum] Length = 329 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 90/156 (57%) Query: 1 MDAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVIN 60 +DA + F+ ++I V LI A+ P +IP+++ + I + GD W EA+ N Sbjct: 174 LDAGIVVFQSEQIDVNKLICNAIRPFLIPIELHDINLKINAPKGMVIQGDSGWLSEAIQN 233 Query: 61 ILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEGSI 120 I+KN +E + + G I I +N LFTEI+I D+G+G KEDL ++F RFY+GKNAG Sbjct: 234 IIKNCMESSGDNGKIEIVCGDNPLFTEIIIHDSGEGFQKEDLFHLFDRFYRGKNAGATGY 293 Query: 121 GIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYK 156 GIGLA+ II Q G I + G F I+F K Sbjct: 294 GIGLALCKMIIIRQGGTITAKNHPKGGAIFSIRFPK 329 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 243,185,824 Number of extensions: 10613879 Number of successful extensions: 41042 Number of sequences better than 1.0e-05: 1915 Number of HSP's gapped: 42172 Number of HSP's successfully gapped: 1920 Length of query: 159 Length of database: 757,237,578 Length adjustment: 115 Effective length of query: 44 Effective length of database: 445,001,193 Effective search space: 19580052492 Effective search space used: 19580052492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)