BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0032.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691280.1| ABC transporter ATP-binding protein [Oceanobaci... 366 e-100 ref|ZP_00060008.1| COG1136: ABC-type antimicrobial peptide trans... 339 3e-92 ref|NP_782040.1| transporter [Clostridium tetani E88] >gi|282035... 303 1e-81 ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridiu... 296 2e-79 ref|NP_782493.1| ABC transporter ATP-binding protein [Clostridiu... 290 2e-77 >ref|NP_691280.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC12315.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 227 Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/226 (77%), Positives = 204/226 (90%) Query: 3 MEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPS 62 ME+L+IE+LSK+YG G++AVKALD++SFSV KGEF GPSGSGKSTLLH+LGGVDRP+ Sbjct: 1 MEMLKIENLSKVYGKGDTAVKALDDISFSVDKGEFVAIIGPSGSGKSTLLHLLGGVDRPT 60 Query: 63 GGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQK 122 GKVFV+ TDMY L+ETQLAIFRRRQIGLIYQF+NLLP+LTVEEN+TLPLLLD+ KVDQK Sbjct: 61 EGKVFVDGTDMYELSETQLAIFRRRQIGLIYQFYNLLPILTVEENITLPLLLDSHKVDQK 120 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 +V L LQ R+ +LPNQLSGGQQQRVSIGRA+I NP+I+LADEPTGNLDS+NS EI Sbjct: 121 HFKEIVDILGLQKRIEYLPNQLSGGQQQRVSIGRAIISNPSIILADEPTGNLDSENSKEI 180 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 +DLLKM N+TY+QTL+VITHD+RIALQADR+ISIEDGRIAKDEVIR Sbjct: 181 VDLLKMFNRTYNQTLVVITHDDRIALQADRVISIEDGRIAKDEVIR 226 >ref|ZP_00060008.1| COG1136: ABC-type antimicrobial peptide transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 231 Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 160/229 (69%), Positives = 202/229 (88%) Query: 1 MIMEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDR 60 + MEILR+E+++K YGTGE+ V+ALD VSFSV+KGEF GPSGSGKSTLLH+LGGVD+ Sbjct: 3 VFMEILRVENVTKTYGTGENMVRALDGVSFSVKKGEFIAIVGPSGSGKSTLLHILGGVDK 62 Query: 61 PSGGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVD 120 P+ GKVF++ D+YA N+ QLAIFRRRQ+GLIYQF+NL+PVL V EN+TLP+L+D +KV+ Sbjct: 63 PTSGKVFMDGKDVYAQNDEQLAIFRRRQVGLIYQFYNLIPVLNVVENITLPVLMDGRKVN 122 Query: 121 QKQLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSN 180 +++L+ L+ TL+L+ R NHLPNQLSGGQQQRVSIGRALI P+++LADEPTGNLDSKNS Sbjct: 123 KERLEELIETLNLKGRENHLPNQLSGGQQQRVSIGRALINAPSVVLADEPTGNLDSKNSQ 182 Query: 181 EIIDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIRR 229 EI++LLK+ NK Y+QTLIVITHDE IALQA+R+I+IEDGRI +DEVIR+ Sbjct: 183 EIVELLKLSNKKYNQTLIVITHDENIALQANRVIAIEDGRIIRDEVIRQ 231 >ref|NP_782040.1| transporter [Clostridium tetani E88] gb|AAO35977.1| transporter [Clostridium tetani E88] Length = 227 Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 145/226 (64%), Positives = 184/226 (81%) Query: 3 MEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPS 62 ME+L+ LSK YG G++ V AL ++ S+ +GEF G SGSGKSTLLH+LGGVD+P+ Sbjct: 1 MEVLKTIDLSKSYGLGDTKVNALKNINISINEGEFVAVVGASGSGKSTLLHLLGGVDKPT 60 Query: 63 GGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQK 122 GKV V+ D+YAL+E +LA+FRRR+IG I+QF+NL+PVLT EEN+TLP+LLDN+KVD+K Sbjct: 61 SGKVIVDGADIYALSEKELAVFRRRKIGFIFQFYNLIPVLTAEENITLPILLDNKKVDKK 120 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 + L++ L LQ+R NHLP++LSGGQQQRVSIGRAL P+I+LADEPTGNLDSKNS EI Sbjct: 121 YEEELINILGLQNRRNHLPSELSGGQQQRVSIGRALAYKPSIILADEPTGNLDSKNSKEI 180 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 I+LL+ + YHQTLI+ITHD IA QADRII+IEDG + KDEV+R Sbjct: 181 IELLRFSVQKYHQTLIIITHDLNIASQADRIITIEDGSVVKDEVMR 226 >ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO36345.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 226 Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 140/226 (61%), Positives = 179/226 (79%) Query: 3 MEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPS 62 MEIL++E+LSKIYG G + V+AL VSF++++GEF G SGSGKSTLLHM+GG+D+P+ Sbjct: 1 MEILKVENLSKIYGEGNNRVEALRNVSFAIERGEFVAIVGASGSGKSTLLHMIGGLDKPT 60 Query: 63 GGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQK 122 GKV+++ D+Y L E LAIFRRR +G ++QFFNL+PVL VEEN++LP LLD K+D+ Sbjct: 61 SGKVYIDGEDIYKLKEDNLAIFRRRNVGFVFQFFNLIPVLNVEENISLPALLDKDKIDKA 120 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 L +V L L+ R+ HLP++LSGGQQQRVSIGRALI P+I+LADEPTGNLDSKNS E+ Sbjct: 121 YLKEVVEMLGLKERITHLPSELSGGQQQRVSIGRALINKPSIILADEPTGNLDSKNSKEV 180 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 I+LLK +K Y+QTLI+ITHD IA QADR+I+I DG I D IR Sbjct: 181 IELLKYSSKKYNQTLIIITHDMNIAEQADRVINIVDGEIKSDNKIR 226 >ref|NP_782493.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO36430.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 234 Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 143/227 (62%), Positives = 184/227 (81%) Query: 2 IMEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRP 61 IME LRIE+L K+YG GE+ V ALD VS +++KGEF G SGSGKSTLLH++ GVD P Sbjct: 7 IMEFLRIENLCKVYGKGENQVTALDHVSLTIEKGEFTAIIGSSGSGKSTLLHIIAGVDVP 66 Query: 62 SGGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQ 121 + GKV+++ D+YA + +LAIFRRRQ+GLIYQF NL+P L V EN+TLP+L+D +KV++ Sbjct: 67 TSGKVYLDGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNE 126 Query: 122 KQLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNE 181 ++L+ L+ L L+ R HLPNQLSGGQQQRVSIGRAL+ PA+MLADEPTG+LDS+N +E Sbjct: 127 ERLNDLLDLLGLKDRKMHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHE 186 Query: 182 IIDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 II+LLK+ N+ Y QTLIV+THDE IALQADRII I DG++ +DE +R Sbjct: 187 IINLLKLSNQKYQQTLIVVTHDENIALQADRIIGISDGKVVRDERVR 233 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.138 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 330,324,444 Number of extensions: 13781542 Number of successful extensions: 104659 Number of sequences better than 1.0e-05: 20522 Number of HSP's gapped: 81174 Number of HSP's successfully gapped: 21762 Length of query: 229 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 108 Effective length of database: 428,710,599 Effective search space: 46300744692 Effective search space used: 46300744692 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)