BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0022.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00069099.1| COG0794: Predicted sugar phosphate isomerase ... 164 7e-40 ref|NP_347037.1| Predicted sugar phosphate aminotransferase invo... 162 3e-39 ref|NP_763897.1| conserved hypothetical protein [Staphylococcus ... 146 2e-34 ref|NP_693625.1| hypothetical protein OB2704 [Oceanobacillus ihe... 143 2e-33 gb|EAD13452.1| unknown [environmental sequence] 142 3e-33 >ref|ZP_00069099.1| COG0794: Predicted sugar phosphate isomerase involved in capsule formation [Oenococcus oeni MCW] Length = 180 Score = 164 bits (416), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 117/177 (66%), Gaps = 4/177 (2%) Query: 7 ILAEAHAVLEQVDEGAVNKTAALLAGAPRIFVVGEGRSGLMAKSFAMRLMHLGATSFVIG 66 +L E V++ VDE + +++ RIFV+G GRSGLMAK FAMRLMH+G T +VIG Sbjct: 7 VLQEITTVMDDVDEKQLQAVEKIISKEKRIFVLGAGRSGLMAKGFAMRLMHIGYTVYVIG 66 Query: 67 ETITPSIAGGDYVVAVSGSGTTHGVVWTAEKARELGASVIALTTDAESPLARSAVQVLAI 126 ETITPSIA GD +V+VSGSGTT V+ EKA + G ++A+T++++SPLA+++ L + Sbjct: 67 ETITPSIAAGDVLVSVSGSGTTGSVLEPTEKAHQNGVEIVAVTSNSQSPLAKNSDVALIV 126 Query: 127 PAATKHRRDGEGA-SVQPLGSLFDQCVHLVLDAVCLCYAESHGVDNAAAFRQHSNVE 182 P ATK G+G S+Q L +LFDQ H+ LD + L + N AA HSN+E Sbjct: 127 PGATKA---GDGVKSIQLLSTLFDQTTHITLDILTLMLSRRDNTSNDAAKAAHSNME 180 >ref|NP_347037.1| Predicted sugar phosphate aminotransferase involved in capsule formation [Clostridium acetobutylicum] pir||F96948 probable sugar phosphate aminotransferase involved in capsule formation [imported] - Clostridium acetobutylicum gb|AAK78377.1| Predicted sugar phosphate aminotransferase involved in capsule formation [Clostridium acetobutylicum] Length = 182 Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 114/182 (62%) Query: 1 MNKLMTILAEAHAVLEQVDEGAVNKTAALLAGAPRIFVVGEGRSGLMAKSFAMRLMHLGA 60 M L IL E V+ V+E ++ + R+FV GEGRSGL+ K FAMRLMH+G Sbjct: 1 MEVLKDILGEITQVINNVNESEMDGVVDFITKNKRVFVCGEGRSGLIGKCFAMRLMHIGY 60 Query: 61 TSFVIGETITPSIAGGDYVVAVSGSGTTHGVVWTAEKARELGASVIALTTDAESPLARSA 120 T +V+GETITPSI D + A+SGSG T V+ K++++GA +I +T+ S LA ++ Sbjct: 61 TVYVVGETITPSIKADDVLFAISGSGETSMVLNLVRKSKDMGAHIIGITSREGSSLASAS 120 Query: 121 VQVLAIPAATKHRRDGEGASVQPLGSLFDQCVHLVLDAVCLCYAESHGVDNAAAFRQHSN 180 + + +P A K + + S+Q L SLFDQ VH+V+DA+CL + +DN AA + HSN Sbjct: 121 FKKIIVPGAVKGDKGTDKKSIQLLSSLFDQSVHIVMDALCLKLSYKDRIDNDAAIKNHSN 180 Query: 181 VE 182 +E Sbjct: 181 LE 182 >ref|NP_763897.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gb|AAO03939.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] Length = 182 Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 3/182 (1%) Query: 1 MNKLMTILAEAHAVLEQVDEGAVNKTAALLAGAPRIFVVGEGRSGLMAKSFAMRLMHLGA 60 N IL E + L QVD + A + GA RIF G+GRSG +A SFAMRL L Sbjct: 4 FNNYRLILEELDSTLSQVDNTEYERFANDVIGADRIFTAGKGRSGFVANSFAMRLNQLDK 63 Query: 61 TSFVIGETITPSIAGGDYVVAVSGSGTTHGVVWTAEKARELGASVIALTTDAESPLARSA 120 ++V+GE+ TPSI D + +SGSG+T + AEKA+ +GA ++ LTT+AESP+A A Sbjct: 64 NAYVVGESTTPSIKEHDLFIIISGSGSTEHLRLLAEKAQSVGAKIVLLTTNAESPIANLA 123 Query: 121 VQVLAIPAATKHRRDGEGASVQPLGSLFDQCVHLVLDAVCLCYAESHGVDNAAAFRQHSN 180 V+ +PA TKH D EG S QPLGSLF+Q + LD+V L ++ + H+N Sbjct: 124 ETVVELPAGTKH--DVEG-SKQPLGSLFEQASLIFLDSVVLPLMDAFHISEKTMQENHAN 180 Query: 181 VE 182 +E Sbjct: 181 LE 182 >ref|NP_693625.1| hypothetical protein OB2704 [Oceanobacillus iheyensis HTE831] dbj|BAC14660.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 185 Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 3 KLMTILAEAHAVLEQVDEGAVNKTAALLAGAPRIFVVGEGRSGLMAKSFAMRLMHLGATS 62 K+ TI E VL QV+E + + A + A R+F+ G GRSGL+ K F MRLMH G Sbjct: 4 KVNTIAKEIQEVLGQVNEAELIELAEGIQQASRVFIAGTGRSGLVGKMFGMRLMHSGYQI 63 Query: 63 FVIGETITPSIAGGDYVVAVSGSGTTHGVVWTAEKARELGASVIALTTDAESPLARSAVQ 122 +++GET TPS+ D ++ +SGSG T ++ A+KA+E+ A V +TT+ ES + + Sbjct: 64 YIVGETNTPSLESNDLLILISGSGGTSSLLNYAKKAKEIDAKVALVTTNKESAIGSQSTY 123 Query: 123 VLAIPAATKHRRDGEGASVQPLGSLFDQCVHLVLDAVCLCYAESHGVDNA--AAFRQHSN 180 ++ +PAATK R E ++QPLGS FDQ HL+LDA+ + +++ + + ++H+N Sbjct: 124 IVRVPAATKKRLPQEPETIQPLGSQFDQSAHLLLDAIVVYLLDTYPANRTVESLNQKHTN 183 Query: 181 VE 182 +E Sbjct: 184 LE 185 >gb|EAD13452.1| unknown [environmental sequence] Length = 188 Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 10 EAHAVLEQVDEGAVNKTAALLAGAPRIFVVGEGRSGLMAKSFAMRLMHLGATSFVIGETI 69 E + VL+++DE ++ + RIF+ G GR+GLM KSF+MRLMHLG F IGET Sbjct: 15 EVNHVLKEIDEQQIDLFMDDVLSKDRIFIAGVGRTGLMMKSFSMRLMHLGLKVFYIGETN 74 Query: 70 TPSIAGGDYVVAVSGSGTTHGVVWTAEKARELGASVIALTTDAESPLARSAVQVLAIPAA 129 TPS+ D ++ SGSG T +V EKA++LG ++ T D S LA+ A +++ I A Sbjct: 75 TPSVNHNDLLIVGSGSGETLSLVSITEKAKKLGVKMVLFTIDDLSTLAKQASRIIKISAP 134 Query: 130 T-KHRRDGEGASVQPLGSLFDQCVHLVLDAVCLCYAESHGVDNAAAFRQHSNVE 182 + K ++ S+QP+GSLF+Q + + L+ + + E G+D+ F+ H+N+E Sbjct: 135 SPKLQKSNNLDSIQPMGSLFEQSLLITLETIVVLLMERLGLDSETMFKNHANLE 188 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.130 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 243,385,605 Number of extensions: 9228087 Number of successful extensions: 28217 Number of sequences better than 1.0e-05: 95 Number of HSP's gapped: 28364 Number of HSP's successfully gapped: 95 Length of query: 183 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 65 Effective length of database: 436,855,896 Effective search space: 28395633240 Effective search space used: 28395633240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)