BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0020.p
         (194 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD41944.1| BtrW protein [Bacillus circulans]                      62   8e-09
ref|NP_522682.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralst...    52   6e-06

>emb|CAD41944.1| BtrW protein [Bacillus circulans]
          Length = 217

 Score = 61.6 bits (148), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 1  MCPRTKEQNELIRIQRREQILDVAARSYFRTG-GSFDIRDVAREAGLGYGTVYHYYPNRH 59
          M PRTKEQNE IR QR+ ++L  A + Y   G  + ++ D+A  AGL +G VY+Y+ N+ 
Sbjct: 1  MSPRTKEQNEAIRNQRKREVLQAAVQVYVEKGYAAAEMGDIADRAGLAHGLVYYYFKNKK 60

Query: 60 LLIEDVLDSGFERCEHVIAEWADISGS 86
           L  ++ ++  E  +     + +  GS
Sbjct: 61 ALFRELYETMMEGSKCFTKSYFEQKGS 87


>ref|NP_522682.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
 emb|CAD18272.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
          Length = 197

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 36/51 (70%)

Query: 15 QRREQILDVAARSYFRTGGSFDIRDVAREAGLGYGTVYHYYPNRHLLIEDV 65
          + R+++LDVA  ++   G S  + D+AREAG+G GT+Y ++P R  LI+++
Sbjct: 16 RNRQRLLDVAKTAFAEKGVSASLEDIAREAGVGIGTLYRHFPTRDALIDEI 66


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 289,230,056
Number of extensions: 11494735
Number of successful extensions: 30092
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 30145
Number of HSP's successfully gapped: 6
Length of query: 194
Length of database: 757,237,578
Length adjustment: 119
Effective length of query: 75
Effective length of database: 434,140,797
Effective search space: 32560559775
Effective search space used: 32560559775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 122 (51.6 bits)