BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0014.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_721729.1| hypothetical protein; possible permease [Strept... 138 1e-31 ref|NP_721714.1| conserved hypothetical protein; possible permea... 138 1e-31 ref|ZP_00099393.1| COG0577: ABC-type antimicrobial peptide trans... 95 2e-18 ref|NP_347459.1| Predicted membrane protein [Clostridium acetobu... 79 8e-14 ref|ZP_00100210.1| COG0577: ABC-type antimicrobial peptide trans... 74 3e-12 >ref|NP_721729.1| hypothetical protein; possible permease [Streptococcus mutans UA159] gb|AAN59035.1| hypothetical protein; possible permease [Streptococcus mutans UA159] Length = 781 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 131/215 (60%), Gaps = 7/215 (3%) Query: 3 MKLLFK-LLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLN 61 MK+L K L RDI+ + QF++ +L+V++G+F + GL++++++L YT+ Y+ +Y+LSD Sbjct: 2 MKILLKKLFRDIRTNIAQFITIILIVSIGSFLFVGLSSVASSLRDYTKNYYHDYHLSDAT 61 Query: 62 IYYSQLTQKEIAELS-KVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMT 120 + + LT K+I + K I++ EGR F+ ++F Y +AL I S +++NR + Sbjct: 62 VNFISLTSKKIDAIKDKYTNIQEAEGRVNFEGKQTFKNYSSALTISSFSPTSKLNRSYIV 121 Query: 121 KGSLPSTKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGLGENVEHAKK----NE 176 +G + I+LDS Y K HHY + D I I++N+K+ F I+G+ EN E K N Sbjct: 122 QGRKKLNNNEILLDSDYIKAHHYKMNDSIQIQINSKKFTFKIAGIIENPEFVMKVSGNNL 181 Query: 177 TQDHKNYGIAYVGEEAIPEIA-GSFFFNELLVDAK 210 T + + +GI Y+ E+ +I+ + +N+LL+ K Sbjct: 182 TPEPQKFGIGYITEQKAFDISKKNHSYNQLLLKIK 216 >ref|NP_721714.1| conserved hypothetical protein; possible permease [Streptococcus mutans UA159] gb|AAN59020.1| conserved hypothetical protein; possible permease [Streptococcus mutans UA159] Length = 780 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 131/215 (60%), Gaps = 7/215 (3%) Query: 3 MKLLFK-LLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLN 61 MK+L K L RDI+ + QF++ +L+V++G+F + GL++++++L YT+ Y+ +Y+LSD Sbjct: 1 MKILLKKLFRDIRTNIAQFITIILIVSIGSFLFVGLSSVASSLRDYTKNYYHDYHLSDAT 60 Query: 62 IYYSQLTQKEIAELS-KVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMT 120 + + LT K+I + K I++ EGR F+ ++F Y +AL I S +++NR + Sbjct: 61 VNFISLTSKKIDAIKDKYTNIQEAEGRVNFEGKQTFKNYSSALTISSFSPTSKLNRSYIV 120 Query: 121 KGSLPSTKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGLGENVEHAKK----NE 176 +G + I+LDS Y K HHY + D I I++N+K+ F I+G+ EN E K N Sbjct: 121 QGRKKLNNNEILLDSDYIKAHHYKMNDSIQIQINSKKFTFKIAGIIENPEFVMKVSGNNL 180 Query: 177 TQDHKNYGIAYVGEEAIPEIA-GSFFFNELLVDAK 210 T + + +GI Y+ E+ +I+ + +N+LL+ K Sbjct: 181 TPEPQKFGIGYITEQKAFDISKKNHSYNQLLLKIK 215 >ref|ZP_00099393.1| COG0577: ABC-type antimicrobial peptide transport system, permease component [Desulfitobacterium hafniense] Length = 774 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 112/212 (52%), Gaps = 13/212 (6%) Query: 8 KLLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLNIYYSQL 67 K+LRD K++ FL+ V + ++G ++G+ + +K+ NL+D IY ++ Sbjct: 8 KVLRDTKENRWSFLAIVCICSLGIALFSGINMYVTTVEAAVSDAYKQANLADYWIYKGEI 67 Query: 68 TQKEIAELSKVEGIRKLEGRYTFDATESFDGYR-AALKIHSIPENNEINRPAMTKGSLP- 125 + +A+L +E +++++ R D T G A L +H++ E IN P + +GS Sbjct: 68 SPSHLADLRSLEEVQEVQRRKVTDIT--LPGTPGAVLHLHALDETATINVPELLEGSGLD 125 Query: 126 -STKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGL---GENVEHAKKNET-QDH 180 S + ++LDS +A+ H S GD+I K+ ++I G+ GE + +A + T D+ Sbjct: 126 GSEANALLLDSRFAEAHGLSAGDRITAGEGEKQTKWLIQGIVRAGEYIYYAPEGLTVPDY 185 Query: 181 KNYGIAYVGEEAIPEIAGSFFFNELLVDAKEG 212 + YG AY ++PE+ FNE+++ EG Sbjct: 186 QKYGFAYTNASSLPEVP----FNEIILTVAEG 213 >ref|NP_347459.1| Predicted membrane protein [Clostridium acetobutylicum] pir||D97001 probable membrane protein [imported] - Clostridium acetobutylicum gb|AAK78799.1| Predicted membrane protein [Clostridium acetobutylicum] Length = 1116 Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 4 KLLFK-LLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLNI 62 K FK L + I + +FLS ++++AVG FY G+ A S ++ + YF + N D + Sbjct: 3 KTFFKNLFKSISTTLSRFLSILIIIAVGVSFYVGVRASSPDMKMSADKYFNDSNFMDFKL 62 Query: 63 YYSQ-LTQKEIAELSKVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMTK 121 + LT K++ E+ K+ ++ +G + DA L + S+P+ N +N+ + + Sbjct: 63 ISTLGLTDKDVKEVRKLSKVKAAKGSKSMDAVIENGKDTIVLNVESLPKKNGVNKVQVVR 122 Query: 122 GSLPSTKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGLGENVEHAKKN 175 G LPS + ++ + KE+ + +GD + ++ SG N+E KN Sbjct: 123 GRLPSKNTELAVEERFLKENKFKIGDVLKLK----------SGNDTNIEDRLKN 166 >ref|ZP_00100210.1| COG0577: ABC-type antimicrobial peptide transport system, permease component [Desulfitobacterium hafniense] Length = 794 Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 9/197 (4%) Query: 1 VSMKLLFKLLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDL 60 V + L K LRD+K++ GQF+S + VV +G FYTGL + + + YF EY L+DL Sbjct: 2 VMVIFLKKSLRDLKEAKGQFISVLAVVIIGVMFYTGLYSALDIFSGAGQKYFTEYRLADL 61 Query: 61 NIYYSQLTQKEIAELSKVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNE--INRPA 118 + + + + + + G++ EGR D + A +++ S+P+ +N Sbjct: 62 SSTVYRAPEGVVERVRAIPGVKMAEGRVLQDVRIFMEDRNAVVRLISLPDQKRAVVNDIM 121 Query: 119 MTKGSLPS--TKDGIVLDSSYAKEHHYSVGDKIIIRVNNKELAFIISGL--GENVEHAKK 174 + GS S + ++ + K +H +G I VN + + I G G + + Sbjct: 122 LKAGSYFSADAANQCLVSEDFFKANHLVIGQTIEPIVNGERVKLSIVGTVKGPEYMYEIR 181 Query: 175 NETQ---DHKNYGIAYV 188 + T+ DH+ +G+ YV Sbjct: 182 DATEVFPDHEKFGVIYV 198 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 365,854,829 Number of extensions: 15554523 Number of successful extensions: 38970 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 38976 Number of HSP's successfully gapped: 20 Length of query: 254 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 131 Effective length of database: 423,280,401 Effective search space: 55449732531 Effective search space used: 55449732531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)