BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0011.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241686.1| two-component response regulator [Bacillus halo... 140 2e-32 ref|NP_485213.1| two-component response regulator [Nostoc sp. PC... 135 5e-31 ref|NP_825593.1| putative two-component system response regulato... 135 6e-31 ref|NP_842837.1| DNA-binding response regulator [Bacillus anthra... 135 7e-31 ref|NP_346930.1| Response regulator (CheY domain, HTH domain) [C... 135 7e-31 >ref|NP_241686.1| two-component response regulator [Bacillus halodurans] pir||D83752 two-component response regulator BH0820 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04539.1| two-component response regulator [Bacillus halodurans] Length = 234 Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 8/209 (3%) Query: 1 LEQRGYSVQWLLSGEGAEK--EVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLS 58 L+ GY V GE A + E N +++V+LD+MLP +G + ++ + VP+L++S Sbjct: 23 LQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRNGIDCLQWIRTKS-VVPVLIMS 81 Query: 59 ARTSVDDKVDGLQF-ADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHI----EV 113 A+ S DK GL F ADDY+TKPF EL AR++ N E+ Sbjct: 82 AKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVNYAQASQSAENERIKIHEL 141 Query: 114 DPEAQMVFDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMV 173 E K+ GEEI LT K+ QIL F+ HP KV KEQ+Y ++W + Y + + + V Sbjct: 142 VVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQLYRSVWNDDYYSDENVINV 201 Query: 174 HIRRLRQKLERNPDSPEIIETLKGIGYRV 202 HIRRLR+K+E P P+ I+T+ GIGYR+ Sbjct: 202 HIRRLREKIEDTPSKPQYIKTIWGIGYRM 230 >ref|NP_485213.1| two-component response regulator [Nostoc sp. PCC 7120] pir||AG1952 two-component response regulator alr1170 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB73127.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 234 Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 113/211 (53%), Gaps = 8/211 (3%) Query: 1 LEQRGYSVQWLLSGEGA----EKEVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILL 56 L Q+ Y V W++ G A E Q+ +VILD MLPG+ G + KRL+ +PIL+ Sbjct: 20 LNQQKYLVDWVMDGNDAWTYLENSSAQYTVVILDWMLPGISGLELCKRLRYQGNPLPILM 79 Query: 57 LSARTSVDDKVDGLQF-ADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHIEVDP 115 L+A+ ++DKV GL ADDYL KPF EL+ARL N Sbjct: 80 LTAKDRMEDKVAGLDAGADDYLVKPFGMVELLARLRALQRRSPHLQPQQLTVGNFTLDYG 139 Query: 116 EAQMVFDKRTGEE--IILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMV 173 + +V TGE+ I LT K+ Q+L YF+ HP++++ EQI IWE + + Sbjct: 140 NSTVVRQNTTGEQQSIPLTNKEFQLLEYFMNHPHQIVTTEQIRNQIWEVNAESSSNVVAA 199 Query: 174 HIRRLRQKLERNPDSPEIIETLKGIGYRVKL 204 IR LR+KL N D P IETL G+GYR+K Sbjct: 200 QIRLLRRKLTSN-DCPNPIETLHGMGYRLKF 229 >ref|NP_825593.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] dbj|BAC72128.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 249 Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 76/205 (37%), Positives = 118/205 (57%), Gaps = 9/205 (4%) Query: 1 LEQRGYSVQWLLSGEGAEKEVNQH--EIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLS 58 L++ GY V G A H ++V+LD+MLPG+DG V +R++ P VP+++L+ Sbjct: 40 LDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLMLPGMDGLEVCRRMRGRGP-VPVIMLT 98 Query: 59 ARTSVDDKVDGLQF-ADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHIEVDPEA 117 AR DD++ GL+ ADDY+TKPF ELV R+E + + +DP A Sbjct: 99 ARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRTRPVTAPRPLHASGLALDPAA 158 Query: 118 QMVFDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGD-KTLMVHIR 176 + + GEE+ LT ++ +L +FLRHP + +E + +W + GD T+ VH+R Sbjct: 159 RRA--TKDGEELALTIREFDLLAFFLRHPGRAFSREDLMREVW--GWDFGDLSTVTVHVR 214 Query: 177 RLRQKLERNPDSPEIIETLKGIGYR 201 RLR K+E +P P +I+T+ G+GYR Sbjct: 215 RLRGKVEDDPARPRLIQTVWGVGYR 239 >ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames] Length = 237 Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 124/215 (57%), Gaps = 22/215 (10%) Query: 1 LEQRGYSVQWLLSGEGAEKEVNQ--HEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLS 58 LE+ Y V + GE A + NQ + IVILD+M+P +DG V ++L+ VPIL+L+ Sbjct: 23 LERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGIEVCRKLRDKT-NVPILMLT 81 Query: 59 ARTSVDDKVDGLQF-ADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHIEVDPEA 117 A+ DK+ GL ADDY+TKPF E+VAR++ ++I V + Sbjct: 82 AKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLVLG-------SNINVQEKT 134 Query: 118 QMVFDKRT-----------GEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYIT 166 + F T EEI LTGK+ ++L +F +P +V K Q++ +W++ YI Sbjct: 135 TLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQLFRNVWDDNYIE 194 Query: 167 GDKTLMVHIRRLRQKLERNPDSPEIIETLKGIGYR 201 D T+MVHIR+LR+K+E +P +P+ I+T+ GIGY+ Sbjct: 195 DDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYK 229 >ref|NP_346930.1| Response regulator (CheY domain, HTH domain) [Clostridium acetobutylicum] pir||C96935 response regulator (CheY domain, HTH domain) [imported] - Clostridium acetobutylicum gb|AAK78270.1| Response regulator (CheY domain, HTH domain) [Clostridium acetobutylicum] Length = 235 Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 75/189 (39%), Positives = 113/189 (59%), Gaps = 9/189 (4%) Query: 22 NQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLSARTSVDDKVDGLQF-ADDYLTKP 80 N EI+ILDIMLP +DGF V ++++ + +VPI+ LSA++ DK+ GL ADDY+TKP Sbjct: 50 NAPEIIILDIMLPDIDGFEVFRQIRNFS-SVPIMFLSAKSEDTDKIIGLGLGADDYITKP 108 Query: 81 FHSDELVARLEVXXXXXXXXXXXXXXXXN-----HIEVDPEAQMVFDKRTGEEIILTGKQ 135 F E+ R++ N H +D E + + + IL K+ Sbjct: 109 FSPKEVALRVKAHLKRIEMVKKSLTNRENIIKTEHFTIDFEKGEII--KNDKSTILRAKE 166 Query: 136 HQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMVHIRRLRQKLERNPDSPEIIETL 195 +L Y + + N +L KE+I A+WE+ Y+ D T+MVHIR+LRQKLE +P +P+ I T+ Sbjct: 167 LLLLKYLVENKNIILSKEKIVNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTV 226 Query: 196 KGIGYRVKL 204 KG+GY++KL Sbjct: 227 KGLGYKLKL 235 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 285,042,583 Number of extensions: 10322413 Number of successful extensions: 38208 Number of sequences better than 1.0e-05: 2853 Number of HSP's gapped: 34219 Number of HSP's successfully gapped: 2898 Length of query: 204 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 84 Effective length of database: 431,425,698 Effective search space: 36239758632 Effective search space used: 36239758632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)