BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0007.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_601942.1| ABC-type transporter, ATPase component [Coryneb... 251 1e-65 dbj|BAC00141.1| ABC-type transporter, ATPase component [Coryneba... 251 1e-65 ref|NP_739194.1| putative ABC transporter ATP-binding protein [C... 250 2e-65 ref|NP_627438.1| putative ABC transporter ATP-binding protein [S... 249 4e-65 ref|NP_940374.1| Putative ABC transport system, ATP-binding prot... 242 4e-63 >ref|NP_601942.1| ABC-type transporter, ATPase component [Corynebacterium glutamicum ATCC 13032] emb|CAF20769.1| ABC-type multidrug transport system, ATPase component [Corynebacterium glutamicum ATCC 13032] Length = 310 Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 119/219 (54%), Positives = 157/219 (71%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 ++ + L K G + +SF+ +PG VTGFLGPNGAGKS+T+R++LGLD+ T+G A I Sbjct: 1 MINVEGLTKQYGQVRAVDDLSFEVKPGIVTGFLGPNGAGKSTTMRLILGLDNPTAGHATI 60 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 G+P+ L NPL VGA LD H RT HL+WIARA GL RV+EVL + GLT Sbjct: 61 EGQPYRSLKNPLTKVGALLDAKATHPNRTAENHLKWIARANGLSTKRVDEVLTLVGLTGV 120 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 A K+ G +SLGMG+RLG+AAALLGDP+ LILDEPVNGLDPEGI W+RT L+ A+ G TV Sbjct: 121 ASKKTGGFSLGMGQRLGLAAALLGDPEYLILDEPVNGLDPEGIHWVRTLLQNIAKQGRTV 180 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHS 222 L+SSHL+ E+A+T + +++I G +VAD + E + +HS Sbjct: 181 LVSSHLLSEMAQTAEHLIVIGRGKLVADMPMHEFVRSHS 219 >dbj|BAC00141.1| ABC-type transporter, ATPase component [Corynebacterium glutamicum ATCC 13032] Length = 312 Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 119/221 (53%), Positives = 158/221 (71%) Query: 2 LWLLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSA 61 + ++ + L K G + +SF+ +PG VTGFLGPNGAGKS+T+R++LGLD+ T+G A Sbjct: 1 MRMINVEGLTKQYGQVRAVDDLSFEVKPGIVTGFLGPNGAGKSTTMRLILGLDNPTAGHA 60 Query: 62 LINGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLT 121 I G+P+ L NPL VGA LD H RT HL+WIARA GL RV+EVL + GLT Sbjct: 61 TIEGQPYRSLKNPLTKVGALLDAKATHPNRTAENHLKWIARANGLSTKRVDEVLTLVGLT 120 Query: 122 NAAGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGN 181 A K+ G +SLGMG+RLG+AAALLGDP+ LILDEPVNGLDPEGI W+RT L+ A+ G Sbjct: 121 GVASKKTGGFSLGMGQRLGLAAALLGDPEYLILDEPVNGLDPEGIHWVRTLLQNIAKQGR 180 Query: 182 TVLLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHS 222 TVL+SSHL+ E+A+T + +++I G +VAD + E + +HS Sbjct: 181 TVLVSSHLLSEMAQTAEHLIVIGRGKLVADMPMHEFVRSHS 221 >ref|NP_739194.1| putative ABC transporter ATP-binding protein [Corynebacterium efficiens YS-314] dbj|BAC19394.1| putative ABC transporter ATP-binding protein [Corynebacterium efficiens YS-314] Length = 312 Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 120/219 (54%), Positives = 157/219 (71%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 ++ + L K G + ++F +PG VTGFLGPNGAGKS+T+R ++GLD+ TSG A I Sbjct: 1 MIEVAGLTKQYGQVRAVEDLTFTVKPGMVTGFLGPNGAGKSTTMRCIVGLDNPTSGHATI 60 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 +G+P+ L NPL VGA LD H R+ HL+WIA+A GLP SRVEEVL + GL++ Sbjct: 61 DGQPYRALKNPLTRVGALLDAKATHPNRSAANHLKWIAQANGLPTSRVEEVLGLVGLSDV 120 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 AGK+ G +SLGMG+RLG+AAALLGDP+ LILDEPVNGLDPEGI W+R L+ A G TV Sbjct: 121 AGKKTGGFSLGMGQRLGLAAALLGDPEYLILDEPVNGLDPEGIHWVRMLLKNLAAEGRTV 180 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHS 222 L+SSHL+ E+A T D +V+I G +VAD +++ I HS Sbjct: 181 LVSSHLLSEMALTADHLVVIGRGRMVADTPIQDFIREHS 219 >ref|NP_627438.1| putative ABC transporter ATP-binding protein [Streptomyces coelicolor A3(2)] pir||T36316 probable ABC-type transport system ATP-binding protein - Streptomyces coelicolor emb|CAB38595.1| putative ABC transporter ATP-binding protein [Streptomyces coelicolor A3(2)] Length = 317 Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 119/219 (54%), Positives = 161/219 (73%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 ++T++ L K G++ +S +SF+ PGKVTGFLGPNGAGKS+T+R+++GLD TSG AL+ Sbjct: 1 MITLDRLTKRYGDKTAVSDLSFEINPGKVTGFLGPNGAGKSTTMRMIVGLDAPTSGRALV 60 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 GK + EL +PL VGA LD H R+ R HL +AR+ G+P SRV EVL+ GL+ Sbjct: 61 GGKRYEELRHPLREVGALLDARAGHPGRSARHHLLGLARSNGIPASRVGEVLQTVGLSEV 120 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 A KR+GS+SLGMG+RLG+AAALLGDP++L+ DEPVNGLDP+G+RW+R +R A G T+ Sbjct: 121 ANKRIGSFSLGMGQRLGIAAALLGDPKVLLFDEPVNGLDPDGVRWVRELMRSLAAEGRTI 180 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHS 222 +SSHLM E+ ET D +++I G I+AD +EEVI S Sbjct: 181 FVSSHLMSEMQETADHLLVIGRGKIIADAPIEEVIAGSS 219 >ref|NP_940374.1| Putative ABC transport system, ATP-binding protein [Corynebacterium diphtheriae] emb|CAE50576.1| Putative ABC transport system, ATP-binding protein [Corynebacterium diphtheriae] Length = 309 Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 116/219 (52%), Positives = 155/219 (70%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 ++ + L K G + ++F PG VTGFLGPNGAGKS+T+R++LGLD TSG+A I Sbjct: 12 MIEVRGLTKEYGKVRAVDDLTFNVSPGIVTGFLGPNGAGKSTTMRMILGLDTPTSGTATI 71 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 G + L PL VGA LD H R+ R HL W+A++ G+P SRV+EVL + GL++ Sbjct: 72 GGVEYRRLKKPLTHVGALLDAKAVHPNRSARNHLLWLAQSNGIPASRVDEVLALVGLSSV 131 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 A K+ G +SLGMG+RLG+AAALLGDP+++ILDEPVNGLDPEGIRW+R FLR+ A G T+ Sbjct: 132 AKKKAGGFSLGMGQRLGLAAALLGDPEVIILDEPVNGLDPEGIRWVRDFLRRLAAEGRTI 191 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHS 222 L+SSHL+ E+A+T D +V+I G +VA + E I HS Sbjct: 192 LVSSHLLAEMAQTADHLVVIGRGKLVASCSTAEFIQAHS 230 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 363,579,361 Number of extensions: 15123275 Number of successful extensions: 98224 Number of sequences better than 1.0e-05: 14053 Number of HSP's gapped: 89539 Number of HSP's successfully gapped: 14736 Length of query: 240 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 118 Effective length of database: 425,995,500 Effective search space: 50267469000 Effective search space used: 50267469000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)