BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0003.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_654938.1| tetR, Bacterial regulatory proteins, tetR famil... 135 5e-31 ref|NP_774825.1| transcriptional regulatory protein [Bradyrhizob... 114 8e-25 sp|Q7WY76|YEZE_BACSU Putative HTH-type transcriptional regulator... 113 2e-24 ref|NP_388567.1| similar to hypothetical proteins [Bacillus subt... 110 1e-23 ref|ZP_00089206.1| COG1309: Transcriptional regulator [Azotobact... 108 5e-23 >ref|NP_654938.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus anthracis A2012] ref|NP_843514.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] gb|AAP25000.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] Length = 191 Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 103/158 (65%) Query: 1 MGRYKEFDKEAVLHKAMLVFWKKGYEAASIPDLLEAMDLSRSSLYETFGDKQTLYIEAIN 60 MGR F+KE L+KAM +FW+KGY+A I DL+E M +SRS+LY++FGDK L+ + Sbjct: 1 MGRKISFNKERALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLE 60 Query: 61 WYKKWKQAKRDILVNATSAKSGIRQYFEIHIDSALDGESPKGCLITNAAVGMDSPDEQLN 120 YK + KR++L + T+ K ++ +F HI+ + PKGC+ITN+++ + D + Sbjct: 61 QYKNYGSQKRNLLFSDTNTKESLKSFFYQHIEKCYSDDIPKGCIITNSSLLIGQIDPSIE 120 Query: 121 ALIRERFDELEKSFYELLRKGQKTGEIMPEKDIKTLSY 158 ++ F+ELEK+F +++ +G+K GEI E D + ++Y Sbjct: 121 EILINDFNELEKAFKQVIEEGKKKGEISQEDDTELVAY 158 >ref|NP_774825.1| transcriptional regulatory protein [Bradyrhizobium japonicum] dbj|BAC53450.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 202 Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 105/192 (54%), Gaps = 1/192 (0%) Query: 1 MGRYKEFDKEAVLHKAMLVFWKKGYEAASIPDLLEAMDLSRSSLYETFGDKQTLYIEAIN 60 +GR +EFD + + +AM +FW +G+ AS+PDLL M LS+ S Y+ FGDK+++++ A+ Sbjct: 10 VGRPREFDLDEAVRRAMQIFWDRGFHDASLPDLLAGMQLSKGSFYKAFGDKKSVFLRALE 69 Query: 61 WYK-KWKQAKRDILVNATSAKSGIRQYFEIHIDSALDGESPKGCLITNAAVGMDSPDEQL 119 +Y + +++L +A S K+ IR + D + + +GC A M D + Sbjct: 70 FYTDDGVRNVQEVLRSAPSPKAAIRNALVRYADLSSGKKGVRGCFGVLTAAEMLPGDPDI 129 Query: 120 NALIRERFDELEKSFYELLRKGQKTGEIMPEKDIKTLSYLLSNLNHSINIVSKVQGDRSK 179 +I+ F L+ F + KGQ GEI D + +++ + + + ++ KV R + Sbjct: 130 AEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEVIAHFIVSHAQGMRVLGKVGSRRDE 189 Query: 180 MQQMIDMVMEML 191 M + D++MEML Sbjct: 190 MLKDADLLMEML 201 >sp|Q7WY76|YEZE_BACSU Putative HTH-type transcriptional regulator yezE emb|CAE01448.1| yezE [Bacillus subtilis subsp. subtilis str. 168] Length = 194 Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 2/193 (1%) Query: 1 MGRYKEFDKEAVLHKAMLVFWKKGYEAASIPDLLEAMDLSRSSLYETFGDKQTLYIEAIN 60 MGR KEFD VLH+A+ VF + GYE S+ DLL + ++R SLY+T+G K+ L++ A+ Sbjct: 1 MGRNKEFDTALVLHRAIEVFGEYGYEGTSLQDLLSHLGIARQSLYDTYGTKRDLFLSAVK 60 Query: 61 WYKKWKQAK-RDILVNATSAKSGIRQYFEIHIDSALDGESPKGCLITNAAVGMDSPDEQL 119 Y + K A + L S K IR F+ +++ D E K C I N+A+ D +L Sbjct: 61 SYLEGKNAAVMERLEAPGSVKEAIRDIFQEGVNALRDPERAKACYIINSAIEQIPHDPEL 120 Query: 120 NALIRERFDELEKSFYELLRKGQKTGEIMPE-KDIKTLSYLLSNLNHSINIVSKVQGDRS 178 + +LE +FY L + + GE+ E DI L+ L+ S+ ++KV D Sbjct: 121 ARYFERQSKQLEDAFYHGLLRAKDQGELNGEDTDISALARYLNQSRLSLTFIAKVTADMD 180 Query: 179 KMQQMIDMVMEML 191 ++Q +D+ + +L Sbjct: 181 RLQDHVDVSLSVL 193 >ref|NP_388567.1| similar to hypothetical proteins [Bacillus subtilis] pir||D69793 conserved hypothetical protein yeeK - Bacillus subtilis Length = 378 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 2/193 (1%) Query: 1 MGRYKEFDKEAVLHKAMLVFWKKGYEAASIPDLLEAMDLSRSSLYETFGDKQTLYIEAIN 60 +GR KEFD VLH+A+ VF + GYE S+ DLL + ++R SLY+T+G K+ L++ A+ Sbjct: 185 LGRNKEFDTALVLHRAIEVFGEYGYEGTSLQDLLSHLGIARQSLYDTYGTKRDLFLSAVK 244 Query: 61 WYKKWKQAK-RDILVNATSAKSGIRQYFEIHIDSALDGESPKGCLITNAAVGMDSPDEQL 119 Y + K A + L S K IR F+ +++ D E K C I N+A+ D +L Sbjct: 245 SYLEGKNAAVMERLEAPGSVKEAIRDIFQEGVNALRDPERAKACYIINSAIEQIPHDPEL 304 Query: 120 NALIRERFDELEKSFYELLRKGQKTGEIMPE-KDIKTLSYLLSNLNHSINIVSKVQGDRS 178 + +LE +FY L + + GE+ E DI L+ L+ S+ ++KV D Sbjct: 305 ARYFERQSKQLEDAFYHGLLRAKDQGELNGEDTDISALARYLNQSRLSLTFIAKVTADMD 364 Query: 179 KMQQMIDMVMEML 191 ++Q +D+ + +L Sbjct: 365 RLQDHVDVSLSVL 377 >ref|ZP_00089206.1| COG1309: Transcriptional regulator [Azotobacter vinelandii] Length = 195 Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 1/191 (0%) Query: 2 GRYKEFDKEAVLHKAMLVFWKKGYEAASIPDLLEAMDLSRSSLYETFGDKQTLYIEAINW 61 GR + FD E +L +AM +FW+ GYEA S+ DLL A LS+SSLY+T+ K+ L+ A+ Sbjct: 4 GRPRTFDPERMLEQAMQMFWRHGYEATSLQDLLTATGLSKSSLYQTYPSKRALFAAALRH 63 Query: 62 Y-KKWKQAKRDILVNATSAKSGIRQYFEIHIDSALDGESPKGCLITNAAVGMDSPDEQLN 120 Y + ++ R+ L A S + +R + ++ GE+P+GC++ N A D ++ Sbjct: 64 YCAQRRRELRERLQAAVSPREFLRGWLCCALEEECAGEAPRGCMLVNVASEFSQADAEIA 123 Query: 121 ALIRERFDELEKSFYELLRKGQKTGEIMPEKDIKTLSYLLSNLNHSINIVSKVQGDRSKM 180 AL+R + L + E LR+ Q GE+ D++ L+ L + + + K + Sbjct: 124 ALLRSGVEGLRQVLVEALRRAQDCGELDAAADVQVLAGYLQCVMNGLRTQRKAGASVEAL 183 Query: 181 QQMIDMVMEML 191 + I++ + L Sbjct: 184 RATIEVALGCL 194 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 264,634,053 Number of extensions: 10088011 Number of successful extensions: 39382 Number of sequences better than 1.0e-05: 117 Number of HSP's gapped: 39379 Number of HSP's successfully gapped: 117 Length of query: 191 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 72 Effective length of database: 434,140,797 Effective search space: 31258137384 Effective search space used: 31258137384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)