BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0578.0014.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_472054.1| similar to ABC transporter, ATP-binding protein... 259 4e-68 ref|NP_466103.1| similar to ABC transporter, ATP-binding protein... 256 2e-67 ref|NP_832963.1| ABC transporter ATP-binding protein [Bacillus c... 256 2e-67 ref|NP_979568.1| ABC transporter, ATP-binding protein [Bacillus ... 256 2e-67 ref|NP_657123.1| ABC_tran, ABC transporter [Bacillus anthracis A... 255 6e-67 >ref|NP_472054.1| similar to ABC transporter, ATP-binding protein [Listeria innocua] pir||AG1772 ABC transporter, ATP-binding protein homolog lin2725 [imported] - Listeria innocua (strain Clip11262) emb|CAC97951.1| lin2725 [Listeria innocua] Length = 223 Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 124/217 (57%), Positives = 164/217 (75%) Query: 1 VMKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEI 60 +MK +++ Y DG+ + VL + L V +GEFVA++GPSG+GKSTFLS AGALL+PT GEI Sbjct: 4 MMKNISKNYQDGEQVIEVLKSVSLEVAQGEFVAIVGPSGAGKSTFLSIAGALLSPTEGEI 63 Query: 61 FIDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERS 120 I G L++ ++ LT++RL K+GF+FQ A L+PYL V +QLL +A+L+ AKER+ Sbjct: 64 AIGGTTLNNMSEKALTKVRLDKVGFIFQGANLIPYLNVRDQLLVIAELSGEKGSAAKERA 123 Query: 121 SYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVR 180 LL+ L + R+N+YPE LSGG+KQRVAIARA MN P I+ ADEPTASLD NRG +VV+ Sbjct: 124 DKLLQELGLTARQNNYPESLSGGEKQRVAIARALMNDPDIILADEPTASLDANRGHKVVQ 183 Query: 181 MIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVL 217 MIADEV + KAA+MVTHDER+L+ DRV ++DG L Sbjct: 184 MIADEVKQKNKAAIMVTHDERVLDLVDRVIRIEDGYL 220 >ref|NP_466103.1| similar to ABC transporter, ATP-binding protein [Listeria monocytogenes EGD-e] pir||AD1397 ABC transporter, ATP-binding protein homolog lmo2580 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00658.1| lmo2580 [Listeria monocytogenes] Length = 222 Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/217 (57%), Positives = 163/217 (75%) Query: 1 VMKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEI 60 +MK +T+ Y DG+ + VL + L V +GEFVA++GPSG+GKSTFLS AGALL+PT GEI Sbjct: 4 MMKNITKNYQDGEQVIEVLKNVSLEVAQGEFVAIVGPSGAGKSTFLSIAGALLSPTEGEI 63 Query: 61 FIDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERS 120 I G+ L+ +LT++RL K+GF+FQ A L+PYL V +QLL +A+L+ + AKE++ Sbjct: 64 AIGGKVLNDLTSKDLTKVRLDKVGFIFQGANLIPYLNVRDQLLVIAELSGDKGRVAKEKA 123 Query: 121 SYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVR 180 LLK L + R N+YPE LSGG+KQRVAIARA MN P I+ ADEPTASLD +RG +VV+ Sbjct: 124 DELLKELGLTARENNYPESLSGGEKQRVAIARALMNDPDIILADEPTASLDASRGHKVVQ 183 Query: 181 MIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVL 217 MIADEV + KAA+MVTHDER+L+ DRV ++DG L Sbjct: 184 MIADEVKRKNKAAIMVTHDERVLDLVDRVIRIEDGYL 220 >ref|NP_832963.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP10164.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 223 Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 117/217 (53%), Positives = 166/217 (76%) Query: 2 MKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEIF 61 + +V++ YG+G+ +T L+ + L V GEF+ ++GPSGSGKST LS AGALL+P+ G+I+ Sbjct: 7 LDKVSKVYGEGNTEVTALHPMSLDVKAGEFIGIVGPSGSGKSTLLSIAGALLSPSKGDIY 66 Query: 62 IDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERSS 121 I + ++ ++ E+T++RL+KIGF+FQ A L+PYL V+EQLLY+AKL K S +E+++R+ Sbjct: 67 IREQNITQLSEKEMTDIRLKKIGFIFQFANLVPYLNVKEQLLYIAKLKKESKQESEKRAD 126 Query: 122 YLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVRM 181 +LL + ER+NHYP +LSGG+KQRVAIARA+MN P ++ ADEPTASLD R EVV M Sbjct: 127 HLLAAFGLGERKNHYPNQLSGGEKQRVAIARAFMNNPDLILADEPTASLDSKRAREVVEM 186 Query: 182 IADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVLV 218 + EV KAA+M+THDERML+ CDR+ L+DG L+ Sbjct: 187 MKREVKESQKAAIMITHDERMLDVCDRILTLRDGQLI 223 >ref|NP_979568.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS42176.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 223 Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 117/217 (53%), Positives = 166/217 (76%) Query: 2 MKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEIF 61 + +V++ YG+G+ +T L+ + L V GEF+ ++GPSGSGKST LS AGALL+P+ G+I+ Sbjct: 7 LDKVSKVYGEGNTEVTALHPISLDVKAGEFIGIVGPSGSGKSTLLSIAGALLSPSKGDIY 66 Query: 62 IDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERSS 121 I + ++ ++ E+T++RL+KIGF+FQ A L+PYL V+EQLLY+AKL K S +E+++R+ Sbjct: 67 IREQNITQLSEKEMTDIRLKKIGFIFQFANLVPYLNVKEQLLYIAKLKKESKQESEKRAD 126 Query: 122 YLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVRM 181 +LL + ER+NHYP +LSGG+KQRVAIARA+MN P ++ ADEPTASLD R EVV M Sbjct: 127 HLLAAFGLEERKNHYPNQLSGGEKQRVAIARAFMNNPDLILADEPTASLDSKRAREVVEM 186 Query: 182 IADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVLV 218 + EV KAA+M+THDERML+ CDR+ L+DG L+ Sbjct: 187 MKREVKESQKAAIMITHDERMLDVCDRILTLRDGKLI 223 >ref|NP_657123.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_845555.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP27041.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 223 Score = 255 bits (651), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 116/217 (53%), Positives = 166/217 (76%) Query: 2 MKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEIF 61 + +V++ YG+G+ +T L+ + L V GEF+ ++GPSGSGKST LS AGALL+P+ G+I+ Sbjct: 7 LDKVSKVYGEGNTEVTALHPISLDVKAGEFIGIVGPSGSGKSTLLSIAGALLSPSKGDIY 66 Query: 62 IDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERSS 121 I + ++ ++ E+T++RL+KIGF+FQ A L+PYL V+EQLLY+AKL K + +E+++R+ Sbjct: 67 IREQNITKLSEKEMTDIRLKKIGFIFQFANLVPYLNVKEQLLYIAKLKKENKQESEKRAD 126 Query: 122 YLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVRM 181 +LL + ER+NHYP +LSGG+KQRVAIARA+MN P ++ ADEPTASLD R EVV M Sbjct: 127 HLLAAFGLGERKNHYPNQLSGGEKQRVAIARAFMNNPDLILADEPTASLDSKRAREVVEM 186 Query: 182 IADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVLV 218 + EV KAA+M+THDERML+ CDR+ L+DG L+ Sbjct: 187 MKREVKESKKAAIMITHDERMLDVCDRILTLRDGQLI 223 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 314,881,369 Number of extensions: 12137393 Number of successful extensions: 103360 Number of sequences better than 1.0e-05: 20148 Number of HSP's gapped: 84052 Number of HSP's successfully gapped: 21424 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)