BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0578.0013.p (365 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_472055.1| conserved hypothetical protein [Listeria innocu... 266 5e-70 ref|NP_466104.1| conserved hypothetical protein [Listeria monocy... 262 1e-68 ref|NP_832964.1| ABC transporter permease protein [Bacillus cere... 228 2e-58 ref|NP_979569.1| ABC transporter, permease protein, putative [Ba... 226 5e-58 ref|NP_657124.1| DUF214, Predicted permease [Bacillus anthracis ... 226 8e-58 >ref|NP_472055.1| conserved hypothetical protein [Listeria innocua] pir||AH1772 conserved hypothetical protein lin2726 [imported] - Listeria innocua (strain Clip11262) emb|CAC97952.1| lin2726 [Listeria innocua] Length = 362 Score = 266 bits (680), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 148/363 (40%), Positives = 212/363 (58%), Gaps = 9/363 (2%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 ++HSK RY LI +IM+L+++LVLFVTGLA GLA N +A+ + A YY +QKD+D+ R Sbjct: 8 LKHSKLRYILIGLIMVLIAWLVLFVTGLANGLANDNGAAISSNKATYYVLQKDSDNRLTR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 S L E + + + L VQM TIT D K D+T+F +D G + P +++GT Sbjct: 68 SNLTAAETESVAKQLKKSESTNLGVQMGTITPPNKDKKTDITYFGIDKTGFMKPTISEGT 127 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 E E VVAD LKESG +GS +KD A+G TF + F +N++SH+PV++++ W Sbjct: 128 E--PEKTKEVVADISLKESGYKLGSKLKDSATGETFTITAFTKNNTFSHSPVIFVDWDAW 185 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQ 240 K + Q+ Q AE YN +AL + A ++ +G++E+ + K+ + IPGYS EQ Sbjct: 186 KLVH----QTNQAAEG-EYNAVALNVSRDTAKNLS--IGSMELSSSKEVLQGIPGYSEEQ 238 Query: 241 NSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXX 300 SLLMM TIQK +QFGILKA+G + +YL S+V Q Sbjct: 239 GSLLMMIAFLFVIAAFVLAAFFYVITIQKINQFGILKAVGARTAYLGRSIVTQVVFLSVV 298 Query: 301 XXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAI 360 TFG+ LP SMPF L + LF+ ++++GS++S+ RVA+VDALEAI Sbjct: 299 SLLIGNGLTFGLAAILPASMPFTLSPILAIGCSALFLVVAVIGSMLSLYRVAKVDALEAI 358 Query: 361 GRA 363 GRA Sbjct: 359 GRA 361 >ref|NP_466104.1| conserved hypothetical protein [Listeria monocytogenes EGD-e] pir||AE1397 conserved hypothetical protein lmo2581 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00659.1| lmo2581 [Listeria monocytogenes] Length = 362 Score = 262 bits (669), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 145/363 (39%), Positives = 212/363 (58%), Gaps = 9/363 (2%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 ++H+K RY LI +IM+L+++LVLFVTGLA GLA N +A+ + A YY +QKD+D+ R Sbjct: 8 LKHAKLRYILIGLIMVLIAWLVLFVTGLANGLANDNGAAISSNKATYYVLQKDSDNRLTR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 S L +E + + + L VQM TIT D K D+T+F +D G + P +++GT Sbjct: 68 SNLTASETDSVAKQVKKSESTNLGVQMGTITPPNKDKKTDITYFGIDKTGFMKPAISEGT 127 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 E + VVAD LKESG +GS +KD A+G F + F +N++SH+PV+++ W Sbjct: 128 E--PQKTKEVVADISLKESGYKLGSKLKDSATGEEFTITAFTKNNTFSHSPVIFVGWDAW 185 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQ 240 K + Q+ Q AE YN +AL + + A ++ LG++E+ + ++ + IPGYS EQ Sbjct: 186 KLVH----QTNQAAEG-EYNAVALDVSESTAKNLS--LGSMELSSSEEVLQGIPGYSEEQ 238 Query: 241 NSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXX 300 SLLMM TIQK +QFGILKA+G + +YL S+V Q Sbjct: 239 GSLLMMIAFLFVIAAFVLAAFFYVITIQKINQFGILKAVGARTAYLGRSIVTQVVFLSVI 298 Query: 301 XXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAI 360 TFG+ LP SMPF L + LF+ ++++GS++S+ RVA+VDALEAI Sbjct: 299 SLLIGNGLTFGLAAILPASMPFTLSPVLAIGCSALFLVVAVIGSMLSLYRVAKVDALEAI 358 Query: 361 GRA 363 GRA Sbjct: 359 GRA 361 >ref|NP_832964.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] gb|AAP10165.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] Length = 354 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 196/361 (54%), Gaps = 17/361 (4%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 ++ SK RY LI +IM+L+SFLVL ++GLA GL+Y N S+++NM AN + + DA++ R Sbjct: 8 LKQSKLRYGLIGLIMVLLSFLVLVISGLANGLSYDNASSIQNMEANKFVLADDAENKLLR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 SQ+ + ++ S GE+ A P V++ST + K D+ F+ + + L P + +G Sbjct: 68 SQIKKDDVDNVVSQVGEKEAVPFRVKVSTYEKKDSSKKVDIAIFSSERDSFLEPNIVKGE 127 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 ++ +VAD +KE G+ IG TI D S F + GF D +SHTPVVYIN W Sbjct: 128 KL-GTANNEMVADESIKEKGIDIGDTIIDPVSKKEFTIVGFTKDQMFSHTPVVYINEDVW 186 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQ 240 ++ Q + +D Y+ IAL D +++ N VI +K+ + SIPG+ EQ Sbjct: 187 GSISQ---PNQKD-----YSAIALNTD--------KEIKNAHVIDKKEVLQSIPGFKEEQ 230 Query: 241 NSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXX 300 +L M+ T+QKT Q G+LKA+GTK SYLA S+V Q Sbjct: 231 GTLTMIIAFLLVIAALLIGVFFYVITLQKTQQLGVLKAIGTKNSYLANSLVVQALFLSVV 290 Query: 301 XXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAI 360 G+ LP MPF L I +F+ +S+LG+LIS+ +V +VDALEAI Sbjct: 291 AMVISIVLVQGLEQILPAGMPFLLTTPMIAQYAAIFIVISILGTLISLYQVLKVDALEAI 350 Query: 361 G 361 G Sbjct: 351 G 351 >ref|NP_979569.1| ABC transporter, permease protein, putative [Bacillus cereus ATCC 10987] gb|AAS42177.1| ABC transporter, permease protein, putative [Bacillus cereus ATCC 10987] Length = 354 Score = 226 bits (577), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 196/361 (54%), Gaps = 17/361 (4%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 ++ SK RY LI +IM+L+SFLVL ++GLA GL+Y N S+++NM AN + + DA++ R Sbjct: 8 LKQSKLRYGLIGLIMVLLSFLVLVISGLANGLSYDNASSIQNMEANKFVLADDAENKLLR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 SQ+ + ++ + GE+ A P V++ST + K DV F+ + + L P + +G Sbjct: 68 SQIKKDDVDNVVNQVGEKEAVPFRVKVSTYEKKGSSKKVDVAIFSSERDSFLEPNIVKGE 127 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 ++ +VAD +KE G+ IG TI D S F + GF D +SHTPVVY+N W Sbjct: 128 KL-GTANNEMVADESIKEKGIDIGDTIIDPVSKKEFTIVGFTKDQMFSHTPVVYVNEDVW 186 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQ 240 A+ Q + +D Y+ IAL D +++ N VI +K+ + SIPG+ EQ Sbjct: 187 GAISQ---PNQKD-----YSAIALNTD--------KEIKNAHVIDKKEVLQSIPGFKEEQ 230 Query: 241 NSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXX 300 +L M+ T+QKT Q G+LKA+GTK SYLA S+V Q Sbjct: 231 GTLTMIIAFLLVIAALLIGVFFYVITLQKTQQLGVLKAIGTKNSYLANSLVVQALFLSVV 290 Query: 301 XXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAI 360 G+ LP MPF L I +F+ +S+LG+LIS+ +V +VDALEAI Sbjct: 291 AMVISIVLVQGLEQILPAGMPFLLTTPMIAQYAAIFIVISILGTLISLYQVLKVDALEAI 350 Query: 361 G 361 G Sbjct: 351 G 351 >ref|NP_657124.1| DUF214, Predicted permease [Bacillus anthracis A2012] Length = 354 Score = 226 bits (575), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 196/361 (54%), Gaps = 17/361 (4%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 ++ SK RY LI +IM+L+SFLVL ++GLA GL+Y N S+++NM AN + + DA++ R Sbjct: 8 LKQSKLRYGLIGLIMVLLSFLVLVISGLANGLSYDNASSIQNMEANKFVLADDAENKLLR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 SQ+ + ++ + A E+ A P V++ST + K D+ F+ + + L P + +G Sbjct: 68 SQIKKDDVDNVVNQASEKEAVPFRVKVSTYEKKDSSKKVDIAIFSSERDTFLEPNIVKGE 127 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 ++ +VAD +KE G+ IG TI D S F + GF D +SHTPVVY+N W Sbjct: 128 KL-GTANNEMVADESIKEKGIDIGDTIIDPVSKKEFTIVGFTKDQMFSHTPVVYVNEDVW 186 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQ 240 A+ Q + +D Y+ IAL D +++ N VI +K+ + SIPG+ EQ Sbjct: 187 GAITQ---PNQKD-----YSAIALNTD--------KEIKNAHVINKKEVLQSIPGFKEEQ 230 Query: 241 NSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXX 300 +L M+ T+QKT Q G+LKA+GTK SYLA S+V Q Sbjct: 231 GTLTMIIAFLLVIAALLIGVFFYVITLQKTQQLGVLKAIGTKNSYLANSLVVQALFLSVV 290 Query: 301 XXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAI 360 G+ LP MPF L I +F+ +S+LG+LIS+ +V +VDALEAI Sbjct: 291 AMGISIVLVQGLEQILPAXMPFLLTAPMIAQYAAIFIVISILGTLISLYQVLKVDALEAI 350 Query: 361 G 361 G Sbjct: 351 G 351 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.130 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 405,784,504 Number of extensions: 13877014 Number of successful extensions: 39064 Number of sequences better than 1.0e-05: 34 Number of HSP's gapped: 38964 Number of HSP's successfully gapped: 34 Length of query: 365 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 238 Effective length of database: 412,420,005 Effective search space: 98155961190 Effective search space used: 98155961190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)