BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0578.0009.p
         (79 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD30156.1| putative DNA binding protein [Bacillus thuringie...    68   7e-11
emb|CAD30087.1| putative DNA binding protein [Bacillus thuringie...    67   9e-11

>emb|CAD30156.1| putative DNA binding protein [Bacillus thuringiensis serovar
          israelensis]
          Length = 86

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 2  KQVQFVCDHFGWNYIMGMEFTEDLSDLEKAIKEKLTPDNIYEPCPCGSGNKFKFCCASTM 61
          +++  +CD +   YI+ +E  EDL+DL+KA+K +  P +IY+ C C SG K+KFCC S  
Sbjct: 22 EKIAAICDEYDLYYIISLELNEDLTDLKKAMKGRTRPMDIYDTCACNSGKKYKFCCMS-- 79

Query: 62 KNFDLDV 68
          K  +LD+
Sbjct: 80 KEIELDI 86


>emb|CAD30087.1| putative DNA binding protein [Bacillus thuringiensis serovar
          israelensis]
          Length = 86

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 2  KQVQFVCDHFGWNYIMGMEFTEDLSDLEKAIKEKLTPDNIYEPCPCGSGNKFKFCCASTM 61
          +++  +CD +   YI+ +E  EDL+DL+KA+K +  P +IY+ C C SG K+KFCC S  
Sbjct: 22 EKIAAICDDYDLYYIISLELNEDLTDLKKAMKGRTRPMDIYDTCACNSGKKYKFCCMS-- 79

Query: 62 KNFDLDV 68
          K  +LD+
Sbjct: 80 KEIELDI 86


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.139    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 129,867,148
Number of extensions: 4720230
Number of successful extensions: 9795
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9800
Number of HSP's successfully gapped: 2
Length of query: 79
Length of database: 757,237,578
Length adjustment: 49
Effective length of query: 30
Effective length of database: 624,197,727
Effective search space: 18725931810
Effective search space used: 18725931810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)