BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0032.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_928832.1| hypothetical protein [Photorhabdus luminescens ... 249 4e-65 gb|EAB60197.1| unknown [environmental sequence] 204 1e-51 ref|NP_391169.1| similar to 3-oxoacyl- acyl-carrier protein redu... 187 1e-46 ref|NP_868589.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Pir... 181 2e-44 gb|EAJ40108.1| unknown [environmental sequence] 178 8e-44 >ref|NP_928832.1| hypothetical protein [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE13834.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 248 Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 122/228 (53%), Positives = 158/228 (69%) Query: 19 RAVSLELAACGATVAVNYSRSEAEALETVQRITDQGGRAMAVQANVARDAEVRKMVETIA 78 RA+S+ LA GA VAV YS+SE EA ET + I GG+A+A++A+VA ++ V+ M+ T+ Sbjct: 21 RAISIMLAKQGAAVAVIYSQSELEAQETTEAIIKDGGQAIAIKADVADESAVQAMINTVV 80 Query: 79 GAFGTVDLLVNNASITRYIPMDDLEAATEEVWDELYDVNVKGMFLCARAVAPYMKKNKQG 138 F +D LVNNA+ TR + +DL+A + ++WD + DVNVKG F C R APY+K Sbjct: 81 EKFSGIDYLVNNAATTRQLQFEDLDAISSDIWDAIIDVNVKGTFHCCRYAAPYLKARTGS 140 Query: 139 AIVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALSPDIRVNCVAPGAVATRWWAGR 198 AIVN+ +PYA SK+AVHGLTKSLARAL+P +RVNCVAPGAV TRWW GR Sbjct: 141 AIVNVGSIAGETGLGSCIPYAASKSAVHGLTKSLARALAPSVRVNCVAPGAVETRWWKGR 200 Query: 199 EEQMRRLAPNLLLQRIAEPQDIARFICSTLEQEAMTGQIITVDSGQTL 246 EE+M L L L+RI+ P+D+A L+ E+MTGQIITVDSGQTL Sbjct: 201 EEKMHTLCTYLPLERISTPEDVAEITLMLLKAESMTGQIITVDSGQTL 248 >gb|EAB60197.1| unknown [environmental sequence] Length = 252 Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/252 (46%), Positives = 151/252 (59%), Gaps = 9/252 (3%) Query: 1 MNLSEKVALVTGGGTGIGRAVSLELAACGATVAVNYSRSEAEALETVQRITDQGGRAMAV 60 M L KVALVTG GTG+G A + LA+ G +A+NY +SEA A E V I + GG A A Sbjct: 1 MKLDGKVALVTGAGTGVGAATARLLASKGCRLAINYRKSEAGAKEVVASIIESGGEAFAC 60 Query: 61 QANVARDAEVRKMVETIAGAFGTVDLLVNNASITRYIPMDDLEAATEEVWDELYDVNVKG 120 QA+VA DAE R +VE+I +G +DLLVNNA IT +IP DDL+A T+E W L VN+ G Sbjct: 61 QADVAEDAEARALVESIREKYGCLDLLVNNAGITEFIPFDDLDAVTDEAWHRLMQVNLVG 120 Query: 121 MFLCARAVAPYMKKNK--QGA-IVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALS 177 F CARA M+K + GA IVN+ +PYA SKAA+H LT +LAR L+ Sbjct: 121 AFHCARAAVALMQKTEPADGAEIVNVGSIAGLKATGSCIPYAASKAALHNLTLALARTLA 180 Query: 178 PDIRVNCVAPGAVATRWW-----AGREEQMRRLAPNLLLQRIAEPQDIARFICSTLE-QE 231 P IRVN VAPG + RW G E + L+ + +P+D+A I S +E + Sbjct: 181 PLIRVNAVAPGFITGRWLQDGLGEGYEATKAAFEKAMPLEAVCDPEDVAEAIVSLVEGSD 240 Query: 232 AMTGQIITVDSG 243 +TGQI+ D G Sbjct: 241 LVTGQILACDGG 252 >ref|NP_391169.1| similar to 3-oxoacyl- acyl-carrier protein reductase [Bacillus subtilis] pir||C70022 3-oxoacyl- acyl-carrier protein reductase homolog yusR - Bacillus subtilis emb|CAB15279.1| yusR [Bacillus subtilis subsp. subtilis str. 168] Length = 129 Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 86/129 (66%), Positives = 105/129 (81%) Query: 118 VKGMFLCARAVAPYMKKNKQGAIVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALS 177 +KGMF CARAV P+MKK+K GAIVN+ +PYAVSK+AVHGLTKSLA AL+ Sbjct: 1 MKGMFFCARAVVPFMKKSKDGAIVNVGSIAGITGAGSSMPYAVSKSAVHGLTKSLAHALA 60 Query: 178 PDIRVNCVAPGAVATRWWAGREEQMRRLAPNLLLQRIAEPQDIARFICSTLEQEAMTGQI 237 P+IRV+ VAPGAVATRWWAGREE+M+ + +LLLQ IAEP D+A+ ICS +EQE++TGQI Sbjct: 61 PEIRVSGVAPGAVATRWWAGREEKMKSMIGSLLLQCIAEPDDVAKLICSLIEQESLTGQI 120 Query: 238 ITVDSGQTL 246 IT+DSGQTL Sbjct: 121 ITIDSGQTL 129 >ref|NP_868589.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Pirellula sp. 1] emb|CAD75966.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Pirellula sp.] Length = 251 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/253 (40%), Positives = 146/253 (57%), Gaps = 17/253 (6%) Query: 4 SEKVALVTGGGTGIGRAVSLELAACGATVAVNYSRSEAEALETVQRITDQGGRAMAVQAN 63 S VALVTG TG+GRA ++ LA G V VNYSRSEAEA +T + G ++M V+ + Sbjct: 5 SRPVALVTGAATGVGRACAIGLARQGHDVIVNYSRSEAEAKQTAADVEALGAKSMLVRCD 64 Query: 64 VARDAEVRKMVETIAGAFGTVDLLVNNASITRYIPMDDLEAATEEVWDELYDVNVKGMFL 123 V+ D +VR M+ I FG +D L+NNA+ T +I +LE TE +WD + VN+KG F Sbjct: 65 VSIDEDVRAMIHQIGETFGRLDCLINNAATTEFIEHSELETLTEPMWDRILGVNLKGPFF 124 Query: 124 CARAVAPYMKKNKQGAIVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALSPDIRVN 183 RA A +++ + G++VN+ + Y SK ++ LTKSLARAL+P IRVN Sbjct: 125 VTRAAAELLREGEGGSVVNVSSVAGITGSGSSIAYCASKGGLNTLTKSLARALAPKIRVN 184 Query: 184 CVAPGAVATRWWAGREEQMRRLAPNLLLQRI---------AEPQDIARFICSTLEQEAM- 233 V PG + +RW +R+ PN L+ + ++P+DIA + +M Sbjct: 185 AVCPGPIDSRW-------IRQGNPNWDLEEMVADYPIPKASQPEDIADAVLFFATGTSMT 237 Query: 234 TGQIITVDSGQTL 246 TGQ++ VD GQTL Sbjct: 238 TGQLLPVDGGQTL 250 >gb|EAJ40108.1| unknown [environmental sequence] Length = 262 Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 148/251 (58%), Gaps = 7/251 (2%) Query: 3 LSEKVALVTGGGTGIGRAVSLELAACGATVAVNYSRSEAEALETVQRITDQGGRAMAVQA 62 +++KVA++TG TG+G A ++ LA G V +NY+RS+ EA+ET ++ + G + +QA Sbjct: 1 MAKKVAIITGSATGVGAATAILLAEKGCNVVINYTRSKDEAMETAKQAEELGAETIVIQA 60 Query: 63 NVARDAEVRKMVETIAGAFGTVDLLVNNASITRYIPMDDLEAATEEVWDELYDVNVKGMF 122 +V++D E + MV +G +D LVNNA T++ P ++L+ T + + +Y VNV G + Sbjct: 61 DVSKDDECQAMVTEAIKKWGRIDYLVNNAGQTKFNPFENLDGLTIDDFQSIYAVNVVGAY 120 Query: 123 LCARAVAPYMKKNKQGAIVNLXXXXXXXXXXXXLPYAVSKAAVHGLTKSLARALSPDIRV 182 +AV P+MKK GAIVN + Y SKAA++ +TKSLA L P+IR+ Sbjct: 121 QMIKAVVPHMKKAGSGAIVNDSSLAGINSVGSSIAYVTSKAALNAMTKSLAHVLGPEIRI 180 Query: 183 NCVAPGAVATRWWAG------REEQMRRLAPNLLLQRIAEPQDIARFICSTLEQEAM-TG 235 N VAPG + TRW G E + + NL L+++A +D+A + LE + TG Sbjct: 181 NAVAPGPIKTRWLKGGMSDEAYESLIEQAETNLPLKKVASAEDVAEVLVWFLEGAPLITG 240 Query: 236 QIITVDSGQTL 246 +I+ VDSG L Sbjct: 241 EILIVDSGAHL 251 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.130 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 296,078,007 Number of extensions: 9854222 Number of successful extensions: 59778 Number of sequences better than 1.0e-05: 7792 Number of HSP's gapped: 48643 Number of HSP's successfully gapped: 7814 Length of query: 246 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 124 Effective length of database: 425,995,500 Effective search space: 52823442000 Effective search space used: 52823442000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)