BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0574.0026.p
         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_389110.1| yjlC [Bacillus subtilis] >gi|7475123|pir||A6985...   174   6e-43
ref|NP_834728.1| hypothetical protein [Bacillus cereus ATCC 1457...   173   1e-42
ref|NP_653531.1| hypothetical protein predicted by GeneMark [Bac...   172   1e-42

>ref|NP_389110.1| yjlC [Bacillus subtilis]
 pir||A69852 hypothetical protein yjlC - Bacillus subtilis
 gb|AAC46324.1| unknown [Bacillus subtilis]
 emb|CAB13085.1| yjlC [Bacillus subtilis subsp. subtilis str. 168]
          Length = 140

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 87/140 (62%), Positives = 110/140 (78%), Gaps = 3/140 (2%)

Query: 1   MSETITQSKSFI---KEDLLDQLLKPEVQESLTTLVEQLPQITQLVGALTKSLDFVQTVA 57
           M ETI Q+ + +   ++DL+DQLLKPEVQESLT LV+QLP++T+LV  LTKS DF Q+VA
Sbjct: 1   MPETIDQTNASVSQSQQDLIDQLLKPEVQESLTVLVDQLPKLTELVNILTKSYDFAQSVA 60

Query: 58  ADEVLKNDTVGAIKELAEPVVDSVKTMAATVIEAKDRANESSENITLFGMMRMIKDPQVQ 117
            DEVLK+DTVGAI E+ EPV ++ K +AAT IEAKDRA  S+E I LFG++RM+KDPQ Q
Sbjct: 61  TDEVLKSDTVGAITEILEPVKETAKEVAATAIEAKDRAEASNETIGLFGLLRMLKDPQAQ 120

Query: 118 KMLRFMNAYLQVSGERNPQK 137
           K+ RF N+YL+V  ER  QK
Sbjct: 121 KLFRFANSYLEVMNERENQK 140


>ref|NP_834728.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP11929.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 148

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 112/132 (84%)

Query: 3   ETITQSKSFIKEDLLDQLLKPEVQESLTTLVEQLPQITQLVGALTKSLDFVQTVAADEVL 62
           ET+  S S  + D+LDQLLKPEVQESLTTLVEQLP++T+LV  LTKS DF QTVA DEVL
Sbjct: 15  ETVQISASQGQLDVLDQLLKPEVQESLTTLVEQLPKLTELVNILTKSYDFAQTVATDEVL 74

Query: 63  KNDTVGAIKELAEPVVDSVKTMAATVIEAKDRANESSENITLFGMMRMIKDPQVQKMLRF 122
           K+DTVGAI EL EPV D+VK+MAAT IEAKDRA+ES+E I LFG+++++KDPQ QKM RF
Sbjct: 75  KSDTVGAITELVEPVKDTVKSMAATAIEAKDRADESNEVIGLFGLLKLLKDPQAQKMFRF 134

Query: 123 MNAYLQVSGERN 134
           +NAYLQ+S ERN
Sbjct: 135 VNAYLQISAERN 146


>ref|NP_653531.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
           A2012]
 ref|NP_847488.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 ref|NP_981502.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAP28974.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAS44110.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 146

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 112/132 (84%)

Query: 3   ETITQSKSFIKEDLLDQLLKPEVQESLTTLVEQLPQITQLVGALTKSLDFVQTVAADEVL 62
           ET+  S S  + D+LDQLLKPEVQESLTTLVEQLP++T+LV  LTKS DF QTVA DEVL
Sbjct: 13  ETVQISASQGQLDVLDQLLKPEVQESLTTLVEQLPKLTELVNILTKSYDFAQTVATDEVL 72

Query: 63  KNDTVGAIKELAEPVVDSVKTMAATVIEAKDRANESSENITLFGMMRMIKDPQVQKMLRF 122
           K+DTVGAI EL EPV D+VK+MAAT IEAKDRA+ES+E I LFG+++++KDPQ QKM RF
Sbjct: 73  KSDTVGAITELVEPVKDTVKSMAATAIEAKDRADESNEVIGLFGLLKLLKDPQAQKMFRF 132

Query: 123 MNAYLQVSGERN 134
           +NAYLQ+S ERN
Sbjct: 133 VNAYLQISAERN 144


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.127    0.324 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 156,093,039
Number of extensions: 4836186
Number of successful extensions: 15902
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 15902
Number of HSP's successfully gapped: 3
Length of query: 137
Length of database: 757,237,578
Length adjustment: 99
Effective length of query: 38
Effective length of database: 488,442,777
Effective search space: 18560825526
Effective search space used: 18560825526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)