BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0025.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_834729.1| NADH dehydrogenase [Bacillus cereus ATCC 14579]... 646 0.0 ref|NP_981503.1| pyridine nucleotide-disulphide oxidoreductase [... 645 0.0 ref|NP_653532.1| pyr_redox, Pyridine nucleotide-disulphide oxido... 641 0.0 ref|NP_389111.1| similar to NADH dehydrogenase [Bacillus subtili... 617 e-175 ref|NP_645640.1| ORFID:MW0823~hypothetical protein, similar to N... 218 2e-55 >ref|NP_834729.1| NADH dehydrogenase [Bacillus cereus ATCC 14579] gb|AAP11930.1| NADH dehydrogenase [Bacillus cereus ATCC 14579] Length = 392 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/392 (80%), Positives = 347/392 (88%) Query: 1 MSKHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAV 60 MSK IVILGAGYGGLL+A+NVRKY SK+EA++TV+NQYPTHQIITELHRLAAG+V+EQAV Sbjct: 1 MSKQIVILGAGYGGLLAALNVRKYYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAV 60 Query: 61 AMPLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLE 120 AMPLTKLF GKDIDLKIA V+SFSVDSK+++L+ GTTLSYDALVVALGS TAYFGIPGLE Sbjct: 61 AMPLTKLFKGKDIDLKIATVESFSVDSKEIKLAGGTTLSYDALVVALGSKTAYFGIPGLE 120 Query: 121 EYSMVLKSAADAKQIHGHIEGRIREYAKTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 E SMVLKSAADA +I+ H+E RIREYAKT N ADA AD++PKL Sbjct: 121 ENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLTGVELVGELADIMPKL 180 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPVTNVAGNVID 240 AK +GVNP+E+KL+LVEAGPKILPVLPDHLIERA TSL ARGVTFLTGLPVTNVAGN ID Sbjct: 181 AKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLTGLPVTNVAGNEID 240 Query: 241 LKDGQQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGDSAVVF 300 LKDGQ++VANTFVWTGGVQGNPL+GESGLEVNRGRATV+ +LQSTSH DVFVAGDSAVVF Sbjct: 241 LKDGQKLVANTFVWTGGVQGNPLIGESGLEVNRGRATVDAYLQSTSHKDVFVAGDSAVVF 300 Query: 301 AADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVAIIGAS 360 A DGRPYPPTAQIAWQMGELIGYNLYA L A E F+P+NSGTLASLGRKD VA IGAS Sbjct: 301 APDGRPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVATIGAS 360 Query: 361 NTPLKGLPATLMKEASNIRYLSHIKGLFSLAY 392 NTPLKGLPA+LMKEASN+RYLSHIKGLFSLAY Sbjct: 361 NTPLKGLPASLMKEASNVRYLSHIKGLFSLAY 392 >ref|NP_981503.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus ATCC 10987] gb|AAS44111.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus ATCC 10987] Length = 392 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/392 (80%), Positives = 347/392 (88%) Query: 1 MSKHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAV 60 MSK IVILGAGYGGLL+A+NVRKY SK+EA++TV+NQYPTHQIITELHRLAAG+V+EQAV Sbjct: 1 MSKQIVILGAGYGGLLAALNVRKYYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAV 60 Query: 61 AMPLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLE 120 AMPLTKLF GKDIDLKIA V+SFSVDSK+++L+ GTTLSYDALVVALGS TAYFGIPGLE Sbjct: 61 AMPLTKLFKGKDIDLKIATVESFSVDSKEIKLAGGTTLSYDALVVALGSKTAYFGIPGLE 120 Query: 121 EYSMVLKSAADAKQIHGHIEGRIREYAKTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 E SMVLKSAADA +I+ H+E RIREYAKT N ADA AD++PKL Sbjct: 121 ENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLTGVELVGELADIMPKL 180 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPVTNVAGNVID 240 AK +GVNP+E+KL+LVEAGPKILPVLPDHLIERA TSL ARGVTFLTGLPVTNVAGN ID Sbjct: 181 AKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLTGLPVTNVAGNEID 240 Query: 241 LKDGQQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGDSAVVF 300 LKDGQ++VANTFVWTGGVQGNPL+GESGLEVNRGRATV+ +LQSTSH +VFVAGDSAVVF Sbjct: 241 LKDGQKLVANTFVWTGGVQGNPLIGESGLEVNRGRATVDAYLQSTSHKNVFVAGDSAVVF 300 Query: 301 AADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVAIIGAS 360 A DGRPYPPTAQIAWQMGELIGYNLYA L A E F+P+NSGTLASLGRKD VA IGAS Sbjct: 301 APDGRPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVATIGAS 360 Query: 361 NTPLKGLPATLMKEASNIRYLSHIKGLFSLAY 392 NTPLKGLPA+LMKEASN+RYLSHIKGLFSLAY Sbjct: 361 NTPLKGLPASLMKEASNVRYLSHIKGLFSLAY 392 >ref|NP_653532.1| pyr_redox, Pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis A2012] ref|NP_847489.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis str. Ames] gb|AAP28975.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis str. Ames] Length = 392 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/392 (80%), Positives = 346/392 (88%) Query: 1 MSKHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAV 60 MSK IVILGAGYGGLL+A+NVRKY SK+EA++TV+NQYPTHQIITELHRLAAG+V+EQAV Sbjct: 1 MSKQIVILGAGYGGLLAALNVRKYYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAV 60 Query: 61 AMPLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLE 120 A PLTKLF GKDIDLKIA V+SFSVDSK+++L+ GTTLSYDALVVALGS TAYFGIPGLE Sbjct: 61 ARPLTKLFKGKDIDLKIATVESFSVDSKEIKLAGGTTLSYDALVVALGSKTAYFGIPGLE 120 Query: 121 EYSMVLKSAADAKQIHGHIEGRIREYAKTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 E SMVLKSAADA +I+ H+E RIREYAKT N ADA AD++PKL Sbjct: 121 ENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLTGVELVGELADIMPKL 180 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPVTNVAGNVID 240 AK +GVNP+E+KL+LVEAGPKILPVLPDHLIERA TSL ARGVTFLTGLPVTNVAGN ID Sbjct: 181 AKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATTSLEARGVTFLTGLPVTNVAGNEID 240 Query: 241 LKDGQQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGDSAVVF 300 LKDGQ++VANTFVWTGGVQGNPL+GESGLEVNRGRATV+ +LQSTSH +VFVAGDSAVVF Sbjct: 241 LKDGQKLVANTFVWTGGVQGNPLIGESGLEVNRGRATVDAYLQSTSHKNVFVAGDSAVVF 300 Query: 301 AADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVAIIGAS 360 A DGRPYPPTAQIAWQMGELIGYNLYA L A E F+P+NSGTLASLGRKD VA IGAS Sbjct: 301 APDGRPYPPTAQIAWQMGELIGYNLYAALEGKAFEEFAPVNSGTLASLGRKDAVATIGAS 360 Query: 361 NTPLKGLPATLMKEASNIRYLSHIKGLFSLAY 392 NTPLKGLPA+LMKEASN+RYLSHIKGLFSLAY Sbjct: 361 NTPLKGLPASLMKEASNVRYLSHIKGLFSLAY 392 >ref|NP_389111.1| similar to NADH dehydrogenase [Bacillus subtilis] sp|P80861|YJLD_BACSU NADH dehydrogenase-like protein yjlD (Glucose starvation-inducible protein 5) (GSI5) pir||B69852 probable NADH2 dehydrogenase (EC 1.6.99.3) yjlD - Bacillus subtilis gb|AAC46325.1| NADH dehydrogenase-like protein [Bacillus subtilis] emb|CAB13086.1| yjlD [Bacillus subtilis subsp. subtilis str. 168] Length = 392 Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust. Identities = 299/392 (76%), Positives = 334/392 (85%) Query: 1 MSKHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAV 60 MSKHIVILGAGYGG+LSA+ VRK+ +K +A++TVVN+YPTHQIITELHRLAAG+V+E+AV Sbjct: 1 MSKHIVILGAGYGGVLSALTVRKHYTKEQARVTVVNKYPTHQIITELHRLAAGNVSEKAV 60 Query: 61 AMPLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLE 120 AMPL KLF GKDIDLKIA+V SFSVD K+V L+DG+TL+YDALVV LGS TAYFGIPGLE Sbjct: 61 AMPLEKLFKGKDIDLKIAEVSSFSVDKKEVALADGSTLTYDALVVGLGSVTAYFGIPGLE 120 Query: 121 EYSMVLKSAADAKQIHGHIEGRIREYAKTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 E SMVLKSAADA ++ H+E R+REY+KT N ADA AD++P L Sbjct: 121 ENSMVLKSAADANKVFQHVEDRVREYSKTKNEADATILIGGGGLTGVELVGELADIMPNL 180 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPVTNVAGNVID 240 AK+YGV+ +EIKL LVEAGPKILPVLPD LIERA SL RGV FLTGLPVTNV GNVID Sbjct: 181 AKKYGVDHKEIKLKLVEAGPKILPVLPDDLIERATASLEKRGVEFLTGLPVTNVEGNVID 240 Query: 241 LKDGQQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGDSAVVF 300 LKDG ++VANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSH DVFVAGDSAV F Sbjct: 241 LKDGSKVVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHEDVFVAGDSAVYF 300 Query: 301 AADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVAIIGAS 360 DGRPYPPTAQIAWQMGELIGYNL+AYL E F P+NSGTLASLGRKD VAIIGA+ Sbjct: 301 GPDGRPYPPTAQIAWQMGELIGYNLFAYLEGKTLETFKPVNSGTLASLGRKDAVAIIGAN 360 Query: 361 NTPLKGLPATLMKEASNIRYLSHIKGLFSLAY 392 +TPLKGLPA+LMKEASN+RYL+HIKGLFSLAY Sbjct: 361 STPLKGLPASLMKEASNVRYLTHIKGLFSLAY 392 >ref|NP_645640.1| ORFID:MW0823~hypothetical protein, similar to NADH dehydrogenase [Staphylococcus aureus subsp. aureus MW2] dbj|BAB94688.1| MW0823 [Staphylococcus aureus subsp. aureus MW2] Length = 402 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/392 (33%), Positives = 211/392 (53%), Gaps = 11/392 (2%) Query: 3 KHIVILGAGYGGLLSAINVRKYMSKAEAKITVVNQYPTHQIITELHRLAAGSVAEQAVAM 62 K +++LGAGY GL + ++K +S EA+IT++N+ H T LH +AG++ + V Sbjct: 6 KKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDVLY 65 Query: 63 PLTKLFAGKDIDLKIAKVKSFSVDSKQVQLSDGTTLSYDALVVALGSTTAYFGIPGLEEY 122 P+ + ++ A+V D+K+V+ + G +D LVVALG + FGI G++++ Sbjct: 66 PVESVLKKDKVNFVQAEVTKIDRDAKKVETNQG-IYDFDILVVALGFVSETFGIEGMKDH 124 Query: 123 SMVLKSAADAKQIHGHIEGRIREYA--KTHNPADAAXXXXXXXXXXXXXXXXXADVLPKL 180 + +++ A+++ HIE + YA K + D + D +P+L Sbjct: 125 AFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGELTDRIPEL 184 Query: 181 AKRYGVNPQEIKLMLVEAGPKILPVLPDHLIERAVTSLTARGVTFLTGLPV--TNVAGNV 238 +YGV+ ++K+ VEA PK+LP+ + L+ AV+ L RGV F P+ N G V Sbjct: 185 CSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPIVACNEKGFV 244 Query: 239 IDLKDG--QQIVANTFVWTGGVQGNPLVGESGLEVNRGRATVNDFLQSTSHPDVFVAGD- 295 +++ DG QQ+ A T VW GV+G+ L+ ES V RGR L + ++FV GD Sbjct: 245 VEV-DGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGRIVTKQDLTINGYDNIFVIGDC 303 Query: 296 SAVVFAADGRPYPPTAQIAWQMGELIGYNLYAYLTNAASEAFSPINSGTLASLGRKDGVA 355 SA + A + RP P TAQIA Q GE + N+ L ++E F ++ GT+ SLG DGV Sbjct: 304 SAFIPAGEERPLPTTAQIAMQQGESVAKNIKRILNGESTEEFEYVDRGTVCSLGSHDGVG 363 Query: 356 IIGASNTPLKGLPATLMKEASNIRYLSHIKGL 387 ++ + P+ G A MK+ + R + I G+ Sbjct: 364 MV--FDKPIAGKKAAFMKKVIDTRAVFKIGGI 393 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 529,056,331 Number of extensions: 20318553 Number of successful extensions: 64646 Number of sequences better than 1.0e-05: 309 Number of HSP's gapped: 64137 Number of HSP's successfully gapped: 337 Length of query: 392 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 264 Effective length of database: 409,704,906 Effective search space: 108162095184 Effective search space used: 108162095184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)