BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0021.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_464022.1| weakly similar to esterase [Listeria monocytoge... 206 2e-52 ref|NP_469838.1| weakly similar to esterase [Listeria innocua] >... 205 6e-52 gb|EAF11369.1| unknown [environmental sequence] 137 2e-31 gb|EAE04477.1| unknown [environmental sequence] 115 5e-25 ref|NP_344362.1| Hypothetical protein [Sulfolobus solfataricus] ... 110 2e-23 >ref|NP_464022.1| weakly similar to esterase [Listeria monocytogenes EGD-e] pir||AG1136 esterase homolog lmo0494 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98573.1| lmo0494 [Listeria monocytogenes] Length = 197 Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/195 (52%), Positives = 131/195 (67%), Gaps = 4/195 (2%) Query: 9 ILFQGDSITDWGRNYEDPSSLGVGYALMVAARLGLLYPEKKLTFINRGISGNRAADLQQR 68 +LF GDS+TD GR++E+ LG GY M+A +L ++ +T INRG+S NR ADL +R Sbjct: 4 LLFLGDSVTDAGRDFENDRELGHGYVKMIAEQL----EKEDVTVINRGVSANRVADLHRR 59 Query: 69 WDRDCLELKPTVVSIYIGINDTWRRFDSGEETTAAQFEASYRDIIERTLRATNAKLILVE 128 + D + +P VV+I IGINDTW F E+T+ F+ YR I+ R TNA+L+L+E Sbjct: 60 IEADAISFQPDVVTIMIGINDTWFSFSRWEDTSVTAFKEVYRVILSRIKEETNAELVLME 119 Query: 129 PFVLPVPEDRKGWRQDLDPKIHVVRELAREYGALLVPLDGLFAAASMKADSAFWAPDGVH 188 PFVLP PEDRK WR DLDPKI VRELA E+GA L+PLDGL A ++K F A DGVH Sbjct: 120 PFVLPYPEDRKEWRGDLDPKIGAVRELAAEFGATLIPLDGLMNALAIKHGPTFLAEDGVH 179 Query: 189 PSPAGHALITDAWLK 203 P+ AGH I WL+ Sbjct: 180 PTKAGHEAIASTWLE 194 >ref|NP_469838.1| weakly similar to esterase [Listeria innocua] pir||AG1494 weakly esterase homolog lin0495 [imported] - Listeria innocua (strain Clip11262) emb|CAC95727.1| lin0495 [Listeria innocua] Length = 197 Score = 205 bits (521), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 103/195 (52%), Positives = 131/195 (67%), Gaps = 4/195 (2%) Query: 9 ILFQGDSITDWGRNYEDPSSLGVGYALMVAARLGLLYPEKKLTFINRGISGNRAADLQQR 68 +LF GDS+TD G ++E+ LG GY M+A +L ++ +T INRG+S NR ADL +R Sbjct: 4 LLFLGDSVTDAGCDFENDRELGHGYVKMIAEQL----EKEDVTVINRGVSANRVADLHRR 59 Query: 69 WDRDCLELKPTVVSIYIGINDTWRRFDSGEETTAAQFEASYRDIIERTLRATNAKLILVE 128 + D + L+P VV+I IGINDTW F E+T+ F+ YR I+ R TNA+LIL+E Sbjct: 60 IEADAISLQPDVVTIMIGINDTWFSFSRWEDTSVTAFKEVYRVILNRIKTETNAELILME 119 Query: 129 PFVLPVPEDRKGWRQDLDPKIHVVRELAREYGALLVPLDGLFAAASMKADSAFWAPDGVH 188 PFVLP PEDRK WR DLDPKI VRELA E+GA L+PLDGL A ++K F A DGVH Sbjct: 120 PFVLPYPEDRKEWRGDLDPKIGAVRELAAEFGATLIPLDGLMNALAIKHGPTFLAEDGVH 179 Query: 189 PSPAGHALITDAWLK 203 P+ AGH I WL+ Sbjct: 180 PTKAGHEAIASTWLE 194 >gb|EAF11369.1| unknown [environmental sequence] Length = 182 Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 29 LGVGYALMVAARLGLLYPEKKLTFINRGISGNRAADLQQRWDRDCLELKPTVVSIYIGIN 88 G GYA M A++L + E +LT NRGISGN+ L +RW RDCL+L+P ++SI IG+N Sbjct: 3 FGKGYAWMAASKLLVEKSELELTLHNRGISGNKVHQLAERWKRDCLDLRPDLISILIGVN 62 Query: 89 DTWRRFDSGEETTAAQFEASYRDIIERTLRAT-NAKLILVEPFVLPVPEDRKGWRQDLDP 147 D W + + T +E + +++RT + +L++ EPFVL + W + D Sbjct: 63 DIWHGLNGRYDGTVQTYEDDFDKLLKRTRESLPKVRLVICEPFVLKCGAVNESWFPEFDK 122 Query: 148 KIHVVRELAREYGALLVPLDGLFAAASMKADSAFWAPDGVHPSPAGHALITDAWLKA 204 V + +A E+GA+ VP +F A A+ WA DGVHPS G AL+ W++ Sbjct: 123 YRAVAKRMAEEHGAIFVPFQSMFDEAIRYAEPKHWAGDGVHPSSHGAALMAHYWIRT 179 >gb|EAE04477.1| unknown [environmental sequence] Length = 215 Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 7/209 (3%) Query: 1 MEFQENDIILFQGDSITDWGRN--YEDPSSLGVGYALMVAARLGLLYPEKKLTFINRGIS 58 M+ +LF GDSITD GR+ + + LG GY +V + L YPE + +N GI Sbjct: 1 MKIGTKQTLLFIGDSITDCGRSRPIGERNGLGNGYVAIVDSLLASFYPEASIHVVNTGIG 60 Query: 59 GNRAADLQQRWDRDCLELKPTVVSIYIGINDTWRRFDS---GEETTAAQFEASYRDIIER 115 GNR DL RW D +++ P +SI IGIND R+FDS E+ +FE++YR+++ + Sbjct: 61 GNRITDLAHRWQTDAIDIAPDWLSIMIGINDVARQFDSISLLEQIDPERFESTYRELLGQ 120 Query: 116 TLRATNAKLILVEPFVLPVPEDRKGWRQDLDPKIHVVRELAREYGALLVPLDGLFAAASM 175 +R L L+ PF L + R +D +V+ +A +Y A+ V F Sbjct: 121 -IRDQLKGLTLMTPFYLETNTEDP-MRNLMDVYGKIVKRIANDYDAMFVDTQYFFNQHLK 178 Query: 176 KADSAFWAPDGVHPSPAGHALITDAWLKA 204 + D VHP+ GH ++ A+L++ Sbjct: 179 HRPTQSMCGDRVHPNQTGHMILAKAFLQS 207 >ref|NP_344362.1| Hypothetical protein [Sulfolobus solfataricus] pir||A99487 hypothetical protein SSO3052 [imported] - Sulfolobus solfataricus gb|AAK43152.1| Hypothetical protein [Sulfolobus solfataricus] Length = 210 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 106/213 (49%), Gaps = 15/213 (7%) Query: 1 MEFQENDIILFQGDSITDWGRNYEDPSSLGVGYALMVAARLGLLYPEKKLTFINRGISGN 60 M D+I+F GDSITD R + + LG GY + + +PE K+T IN GISGN Sbjct: 1 MRLSNGDVIVFAGDSITD--REKSNNAPLGYGYVNLFYNLMLAKHPETKITVINSGISGN 58 Query: 61 RAADLQQRWDRDCLELKPTVVSIYIGINDTWRRFDSGEETTAAQFEASYRDIIERTLRAT 120 DL RWD D L KP +SI IGIND +F G T + +Y + + R L+ T Sbjct: 59 TVIDLIDRWDDDVLSYKPNWISILIGIND-LHKFLGGLTTFNPE---NYYENLRRLLKYT 114 Query: 121 -----NAKLILVEPFVLPVPEDRKGWRQ---DLDPK-IHVVRELAREYGALLVPLDGLFA 171 N IL+ PF + + G+R +L P+ I VR L+ E+ A + L F Sbjct: 115 RKVLNNVNFILMTPFYISRNKLEGGFRAKVLELLPQYIEKVRLLSNEFSATYIDLHDTFK 174 Query: 172 AASMKADSAFWAPDGVHPSPAGHALITDAWLKA 204 + +AP+ VHP+ GH +I L+A Sbjct: 175 KLVNIREPNVYAPEPVHPNFTGHMVIALKLLEA 207 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 311,855,448 Number of extensions: 12008393 Number of successful extensions: 27686 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 27672 Number of HSP's successfully gapped: 20 Length of query: 209 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 89 Effective length of database: 431,425,698 Effective search space: 38396887122 Effective search space used: 38396887122 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)