BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0574.0018.p (100 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_464188.1| similar to unknown proteins [Listeria monocytog... 152 2e-36 ref|NP_470009.1| similar to unknown proteins [Listeria innocua] ... 150 6e-36 ref|ZP_00015015.1| COG0599: Uncharacterized homolog of gamma-car... 131 5e-30 ref|NP_531681.1| conserved hypothetical protein [Agrobacterium t... 117 8e-26 ref|NP_354007.1| AGR_C_1801p [Agrobacterium tumefaciens] >gi|255... 116 1e-25 >ref|NP_464188.1| similar to unknown proteins [Listeria monocytogenes EGD-e] pir||AE1157 hypothetical protein lmo0661 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98739.1| lmo0661 [Listeria monocytogenes] Length = 102 Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/100 (72%), Positives = 84/100 (84%) Query: 1 VSNAFATFMKEAPQQQQAWMETVQKLDAASRLDPKTEEIAYISVLAAVRLESGLPFHVKH 60 VS +F F KEAP+ AWMETV KLDAAS+LD KTEE+AYI+V+AA RLESGLPFHVK Sbjct: 3 VSKSFEVFAKEAPEVHSAWMETVHKLDAASKLDKKTEELAYIAVMAATRLESGLPFHVKM 62 Query: 61 AKALGATREEIISAVLLGLPAVGNAVIQALPVALQAYDSE 100 AK+ GATR+EIISA+L+GLPAVGN VI ALP+AL A+D E Sbjct: 63 AKSNGATRDEIISAILVGLPAVGNTVISALPIALDAFDEE 102 >ref|NP_470009.1| similar to unknown proteins [Listeria innocua] pir||AB1516 hypothetical protein homolog lin0666 [imported] - Listeria innocua (strain Clip11262) emb|CAC95898.1| lin0666 [Listeria innocua] Length = 102 Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 72/98 (73%), Positives = 81/98 (82%) Query: 1 VSNAFATFMKEAPQQQQAWMETVQKLDAASRLDPKTEEIAYISVLAAVRLESGLPFHVKH 60 VS +F F KEAP+ AWMETV KLD AS+LD KTEE+AYI+V+AA RLESGLPFHV Sbjct: 3 VSKSFEVFAKEAPEVHSAWMETVHKLDTASKLDKKTEELAYIAVMAATRLESGLPFHVTM 62 Query: 61 AKALGATREEIISAVLLGLPAVGNAVIQALPVALQAYD 98 AK GATREEIISA+L+GLPAVGN VI ALPVAL+AYD Sbjct: 63 AKTNGATREEIISAILVGLPAVGNTVISALPVALEAYD 100 >ref|ZP_00015015.1| COG0599: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Rhodospirillum rubrum] Length = 122 Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 66/98 (67%), Positives = 74/98 (75%) Query: 1 VSNAFATFMKEAPQQQQAWMETVQKLDAASRLDPKTEEIAYISVLAAVRLESGLPFHVKH 60 VS AF F EAP +AWM VQ LD AS LD KTEE+AY+ VLAA RL SG+ FHV+ Sbjct: 21 VSKAFERFFAEAPGHAKAWMAAVQGLDQASGLDKKTEELAYLGVLAAARLPSGIAFHVQS 80 Query: 61 AKALGATREEIISAVLLGLPAVGNAVIQALPVALQAYD 98 AKA GATREEII AVL+GLPAVG VI+ALP+AL AYD Sbjct: 81 AKAAGATREEIIGAVLIGLPAVGAGVIEALPIALDAYD 118 >ref|NP_531681.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AG2697 conserved hypothetical protein Atu0983 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAL41997.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 106 Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 58/99 (58%), Positives = 71/99 (71%) Query: 1 VSNAFATFMKEAPQQQQAWMETVQKLDAASRLDPKTEEIAYISVLAAVRLESGLPFHVKH 60 S +F FM +AP + AW + +Q L AAS LD KT+ + YI +LAA+RLESG+ FHV Sbjct: 7 TSASFQRFMTDAPAHKAAWFQAIQGLGAASTLDVKTQSLIYIGILAALRLESGIGFHVME 66 Query: 61 AKALGATREEIISAVLLGLPAVGNAVIQALPVALQAYDS 99 AKA GA+RE+IISAVL GLPA GNAVI AL AL A+D Sbjct: 67 AKARGASREDIISAVLTGLPAAGNAVIGALGPALDAFDG 105 >ref|NP_354007.1| AGR_C_1801p [Agrobacterium tumefaciens] pir||G97479 hypothetical protein AGR_C_1801 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gb|AAK86792.1| AGR_C_1801p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 135 Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/99 (58%), Positives = 71/99 (71%) Query: 1 VSNAFATFMKEAPQQQQAWMETVQKLDAASRLDPKTEEIAYISVLAAVRLESGLPFHVKH 60 S +F FM +AP + AW + +Q L AAS LD KT+ + YI +LAA+RLESG+ FHV Sbjct: 36 TSASFQRFMTDAPAHKAAWFQAIQGLGAASTLDVKTQSLIYIGILAALRLESGIGFHVME 95 Query: 61 AKALGATREEIISAVLLGLPAVGNAVIQALPVALQAYDS 99 AKA GA+RE+IISAVL GLPA GNAVI AL AL A+D Sbjct: 96 AKARGASREDIISAVLTGLPAAGNAVIGALGPALDAFDG 134 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.128 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 125,575,329 Number of extensions: 3861265 Number of successful extensions: 11275 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 11282 Number of HSP's successfully gapped: 8 Length of query: 100 Length of database: 757,237,578 Length adjustment: 67 Effective length of query: 33 Effective length of database: 575,325,945 Effective search space: 18985756185 Effective search space used: 18985756185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)