BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0574.0012.p
         (95 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAH31815.1| unknown [environmental sequence]                       117   7e-26
ref|NP_714313.1| Appr-1''-p processing enzyme family protein [Le...   114   5e-25
gb|AAS71839.1| conserved hypothetical protein [Leptospira interr...   114   6e-25
ref|ZP_00117802.1| COG2110: Predicted phosphatase homologous to ...   108   5e-23
ref|NP_706956.1| putative polyprotein [Shigella flexneri 2a str....   106   1e-22

>gb|EAH31815.1| unknown [environmental sequence]
          Length = 169

 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 66/79 (83%)

Query: 11 LKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAVGE 70
          +++ KGDITK  AD IVNAAN+SLLGGGGVDGAIHRAGG +IL  C+EIRN+QG C  GE
Sbjct: 3  IELIKGDITKIEADAIVNAANSSLLGGGGVDGAIHRAGGKKILDECLEIRNRQGKCRTGE 62

Query: 71 AVYTTAGNLLARYVIHTVG 89
          AV TT GNL A+YVIHTVG
Sbjct: 63 AVVTTGGNLPAKYVIHTVG 81


>ref|NP_714313.1| Appr-1''-p processing enzyme family protein [Leptospira
          interrogans serovar lai str. 56601]
 gb|AAN51331.1| Appr-1''-p processing enzyme family protein [Leptospira
          interrogans serovar lai str. 56601]
          Length = 175

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 64/79 (81%)

Query: 11 LKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAVGE 70
          +K+ K DIT+   D IVNAAN+SLLGGGGVDGAIHRAGGPEIL  C +IR +QG C VGE
Sbjct: 5  IKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGE 64

Query: 71 AVYTTAGNLLARYVIHTVG 89
          AV TTAG L A+++IHTVG
Sbjct: 65 AVITTAGRLNAKFIIHTVG 83


>gb|AAS71839.1| conserved hypothetical protein [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 175

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 64/79 (81%)

Query: 11 LKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAVGE 70
          +K+ K DIT+   D IVNAAN+SLLGGGGVDGAIHRAGGPEIL  C +IR +QG C VGE
Sbjct: 5  IKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGE 64

Query: 71 AVYTTAGNLLARYVIHTVG 89
          AV TTAG L A+++IHTVG
Sbjct: 65 AVITTAGRLNAKFIIHTVG 83


>ref|ZP_00117802.1| COG2110: Predicted phosphatase homologous to the C-terminal
          domain of histone macroH2A1 [Cytophaga hutchinsonii]
          Length = 177

 Score =  108 bits (269), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 62/80 (77%)

Query: 10 LLKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAVG 69
          +++V KGDIT    D IVNAANTSLLGGGGVDGAIHRAGG EIL  C +I  +QG C  G
Sbjct: 1  MIEVIKGDITTVEVDAIVNAANTSLLGGGGVDGAIHRAGGKEILEDCRKIIARQGSCKTG 60

Query: 70 EAVYTTAGNLLARYVIHTVG 89
          EAV TTAG L A++VIHTVG
Sbjct: 61 EAVITTAGKLPAKFVIHTVG 80


>ref|NP_706956.1| putative polyprotein [Shigella flexneri 2a str. 301]
 ref|NP_836741.1| putative polyprotein [Shigella flexneri 2a str. 2457T]
 gb|AAN42663.1| putative polyprotein [Shigella flexneri 2a str. 301]
 gb|AAP16547.1| putative polyprotein [Shigella flexneri 2a str. 2457T]
          Length = 177

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 61/81 (75%)

Query: 9  TLLKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAV 68
          T + V +GDITK   D+IVNAAN SL+GGGGVDGAIHRA GP +L  C+++R QQG C  
Sbjct: 3  TRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62

Query: 69 GEAVYTTAGNLLARYVIHTVG 89
          G AV T AG+L A+ V+HTVG
Sbjct: 63 GHAVITLAGDLPAKAVVHTVG 83


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 133,744,477
Number of extensions: 4928169
Number of successful extensions: 13000
Number of sequences better than 1.0e-05: 136
Number of HSP's gapped: 12917
Number of HSP's successfully gapped: 136
Length of query: 95
Length of database: 757,237,578
Length adjustment: 63
Effective length of query: 32
Effective length of database: 586,186,341
Effective search space: 18757962912
Effective search space used: 18757962912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)