BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0571.0033.p
         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00150281.1| hypothetical protein Daro287101 [Dechloromona...    67   9e-11
gb|AAQ75174.1| Hit family protein [Alvinella pompejana epibiont ...    66   2e-10
ref|NP_821223.1| hypothetical protein [Streptomyces avermitilis ...    65   6e-10
gb|EAI77744.1| unknown [environmental sequence]                        65   7e-10
ref|NP_562940.1| probable HIT family protein [Clostridium perfri...    63   2e-09

>ref|ZP_00150281.1| hypothetical protein Daro287101 [Dechloromonas aromatica RCB]
          Length = 116

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 14  MSEDFYCDEVFSGKTPVNKVIETDHVLAYYHTKPFYPIHIVAVPKRHISSLLTLQESDNE 73
           MS+  +C ++  GK P  KV E + +LA+    P  P+H++ +PK+HI+SL T+  +D  
Sbjct: 1   MSDCIFC-KIVEGKIPAGKVYEDEDILAFNDINPARPVHVLVIPKKHITSLATVVAADTP 59

Query: 74  TLLELLGVIKQVAAMVTEKYGACRVSTNLG--DYQDSKHLHWHIYFG-EPL 121
            L ++L    ++A       G  RV  N G    Q+  HLH HI  G EP+
Sbjct: 60  VLGKILAKANEIAVAQGSPDG-FRVIINTGRVGQQEVPHLHAHIVGGPEPV 109


>gb|AAQ75174.1| Hit family protein [Alvinella pompejana epibiont 7G3]
          Length = 117

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 19  YCDEVFSGKTPVNKVIETDHVLAYYHTKPFYPIHIVAVPKRHISSLLTLQESDNETLLEL 78
           +C ++  G+ P N+V+E+D  LA++   P  P+HI+ +PK HI S     E+  E + E+
Sbjct: 4   FC-KIIKGEIPSNRVLESDKFLAFHDINPVAPVHILIIPKEHIGS---FHETPKELMGEM 59

Query: 79  LGVIKQVAAMVTEKYGACRVSTNLGD--YQDSKHLHWHIYFG 118
              I++VA  +       R+ TN+GD   Q+  HLH+H+  G
Sbjct: 60  TPFIQEVAEKLGLDGSGYRLITNIGDDGGQEISHLHFHLVGG 101


>ref|NP_821223.1| hypothetical protein [Streptomyces avermitilis MA-4680]
 dbj|BAC67758.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 97

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 57  PKRHISSLLTLQESDNETLLELLGVIKQVAAMVTEKYGACRVSTNLGDYQDSKHLHWH-I 115
           P+ H  SL+       E L E++ V++ VAA V +++GAC V TNLG Y++SKH HWH +
Sbjct: 28  PRDHAPSLIDFGAGGEELLAEVIRVVRTVAAQVEQQHGACSVMTNLGLYRESKHQHWHVV 87

Query: 116 YFGEP 120
           + GEP
Sbjct: 88  HRGEP 92


>gb|EAI77744.1| unknown [environmental sequence]
          Length = 114

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 14  MSEDFYCDEVFSGKTPVNKVIETDHVLAYYHTKPFYPIHIVAVPKRHISSLLTLQESDNE 73
           M E  +C ++ +G+ P NKV E  H+LA+   +P  PIH++ +PK+HIS++  +Q  D +
Sbjct: 1   MQECIFC-KIINGEIPCNKVFENKHILAFDDIEPQAPIHVLIIPKKHISTINEIQFEDKD 59

Query: 74  TLLELLGVIKQVAAMVTEKYGACRVSTNLGDY--QDSKHLHWHIYFGEPL 121
            + E+    K++A +   +    R   N  +Y  Q   H+H H+  G  +
Sbjct: 60  LIGEMFIGAKEIAKIKGIQDQGYRTIFNTNEYAGQTVFHIHMHVMGGRRM 109


>ref|NP_562940.1| probable HIT family protein [Clostridium perfringens]
 dbj|BAB81730.1| probable HIT family protein [Clostridium perfringens str. 13]
          Length = 114

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 14  MSEDFYCDEVFSGKTPVNKVIETDHVLAYYHTKPFYPIHIVAVPKRHISSLLTLQESDNE 73
           MS+  +C ++ +G+ P  K+ E D VLA++   P  P+H + +PK HI+SL  + E + E
Sbjct: 1   MSDCIFC-KIVAGEIPSKKIYEDDKVLAFHDISPEAPVHFLVIPKEHIASLNEVNEENAE 59

Query: 74  TLLELLGVIKQVAAMVTEKYGACRVSTNLGDY--QDSKHLHWHIYFGEPLR 122
               +   I ++           RV TN G+   Q   H+H+H+  G  L 
Sbjct: 60  VFAHIFKTINKLVKEQEVAEDGYRVVTNCGEQGGQTVGHIHFHVLGGRNLN 110


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 185,831,461
Number of extensions: 6653355
Number of successful extensions: 14994
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 15163
Number of HSP's successfully gapped: 88
Length of query: 122
Length of database: 757,237,578
Length adjustment: 86
Effective length of query: 36
Effective length of database: 523,739,064
Effective search space: 18854606304
Effective search space used: 18854606304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)