BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0012.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00144987.1| Two-component response regulator yesN [Fusoba... 90 4e-17 ref|NP_603096.1| Two-component response regulator yesN [Fusobact... 89 6e-17 ref|NP_691699.1| hypothetical protein OB0778 [Oceanobacillus ihe... 88 1e-16 ref|ZP_00100010.1| COG4753: Response regulator containing CheY-l... 87 2e-16 ref|ZP_00186880.1| hypothetical protein Rxyl222501 [Rubrobacter ... 87 3e-16 >ref|ZP_00144987.1| Two-component response regulator yesN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA23413.1| Two-component response regulator yesN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 261 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 73/126 (57%) Query: 7 KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66 KL+I DDEP+I G++ L + ++ + EA+++FE + + VL+DI MP I Sbjct: 3 KLMIADDEPLIRRGIKQLIDLSSLQIGEIHEASTGEEALKVFEEFKPEIVLMDINMPKID 62 Query: 67 GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAALDR 126 GL +A ++KS +P+ KI +TGY+ FDYA AIK DY+LK V + + Sbjct: 63 GLSVAKKIKSINPDTKIAIITGYNYFDYAQTAIKIGVEDYILKPISKSDVSEIIVKLVSS 122 Query: 127 LEYEQK 132 L+ E+K Sbjct: 123 LQKERK 128 >ref|NP_603096.1| Two-component response regulator yesN [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL94395.1| Two-component response regulator yesN [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 261 Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 73/126 (57%) Query: 7 KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66 KL+I DDEP+I G++ L + ++ + EA+++FE + + VL+DI MP I Sbjct: 3 KLMIADDEPLIRRGIKQLIDLSSLQIGEIYEASTGEEALKVFEEFKPEIVLMDINMPKID 62 Query: 67 GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAALDR 126 GL +A ++KS +P+ KI +TGY+ FDYA AIK DY+LK V + + Sbjct: 63 GLSVAKKIKSINPDTKIAIITGYNYFDYAQTAIKIGVEDYILKPISKSDVSEIIVKLVSS 122 Query: 127 LEYEQK 132 L+ E+K Sbjct: 123 LQKERK 128 >ref|NP_691699.1| hypothetical protein OB0778 [Oceanobacillus iheyensis HTE831] dbj|BAC12734.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 517 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 5/140 (3%) Query: 7 KLLIVDDEPVIAGGLQML--FEEQQQLKLDVSATCSSTEAIELFERLRS-DAVLLDIQMP 63 ++LIVDDEP+I GLQ +E+ Q K++++ C +AI + L D VL D++MP Sbjct: 5 RILIVDDEPIIRLGLQQTIPWEKYQIEKVEIA--CDGLDAIRKIDGLGGIDLVLSDVRMP 62 Query: 64 GISGLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAA 123 + GL+LA + HP+ K + ++GYD+F YA KAI+ DY+LK +++ + V + Sbjct: 63 NMDGLQLASYLHKNHPQTKTMLISGYDEFAYAKKAIQSGVKDYLLKPVDINELESKVNSL 122 Query: 124 LDRLEYEQKLQMEYRQAQIQ 143 + LE EQ ++ + RQ +I+ Sbjct: 123 VKELEAEQHVKNKTRQKEIR 142 >ref|ZP_00100010.1| COG4753: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Desulfitobacterium hafniense] Length = 289 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 4/141 (2%) Query: 7 KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66 KLLIVDDEP+I G++ L Q+Q +V A+++ + R D VL DI MP + Sbjct: 33 KLLIVDDEPIIRQGIKQLINFQEQSISEVYEAEDGALALDIVKEKRPDIVLADINMPNLD 92 Query: 67 GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAALDR 126 GL LA +K+ PE+++ +TGYD F+YA A+K DY+LK ++ ++ ++ Sbjct: 93 GLNLAREIKAVDPEIRVAVITGYDYFEYAVTALKAGVDDYLLKPVSRSDILELLSKLVND 152 Query: 127 LEYEQKLQMEYRQAQIQLSSM 147 L K + E R+A L+S+ Sbjct: 153 L----KEKTEQRRAMDSLASL 169 >ref|ZP_00186880.1| hypothetical protein Rxyl222501 [Rubrobacter xylanophilus DSM 9941] Length = 232 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 1/114 (0%) Query: 7 KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66 +L++VDD +I G +++ E++ ++ V S EAIEL RLR D V++D+ MPG+ Sbjct: 12 RLIVVDDHDLIRAGFRLVLEQEPDFEV-VGEASSGREAIELCRRLRPDVVVMDLAMPGVD 70 Query: 67 GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAV 120 GLE R+K HP+V ++ +T + +Y +A+K A YVLK+ +VI+A+ Sbjct: 71 GLEATRRIKEEHPQVAVLVVTALEDPEYMLEALKAGAAGYVLKSSPLPRVISAL 124 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 269,081,798 Number of extensions: 9577592 Number of successful extensions: 37636 Number of sequences better than 1.0e-05: 1485 Number of HSP's gapped: 39088 Number of HSP's successfully gapped: 1485 Length of query: 209 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 89 Effective length of database: 431,425,698 Effective search space: 38396887122 Effective search space used: 38396887122 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)