BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0571.0006.p
         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_241720.1| BH0854~unknown [Bacillus halodurans] >gi|253702...   123   1e-27

>ref|NP_241720.1| BH0854~unknown [Bacillus halodurans]
 pir||F83756 hypothetical protein BH0854 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB04573.1| BH0854~unknown [Bacillus halodurans]
          Length = 106

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 69/98 (70%)

Query: 3   EQFFIDKLTEAKDHFERALDCKHTEFDDLYPYMIEHPQFFWYKRYVAWSELLTITSLCEE 62
           E +F +KL  AK  FER +DCKHTEFDDLYPYM E PQFFWYKRYVAW ELLT+  +  +
Sbjct: 7   EVYFEEKLLAAKTQFERTIDCKHTEFDDLYPYMSEQPQFFWYKRYVAWQELLTVVGIAAD 66

Query: 63  LSFNWRQKFSDHQVEYLEQRVMSAKVLDFWFEKNEALI 100
           L   W++ F   QV Y+E +++ AKVLD W+E  E  I
Sbjct: 67  LEIEWKKHFLTKQVSYIEAKILDAKVLDDWYETKEEEI 104


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 149,602,103
Number of extensions: 5238923
Number of successful extensions: 14596
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 14596
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 757,237,578
Length adjustment: 67
Effective length of query: 33
Effective length of database: 575,325,945
Effective search space: 18985756185
Effective search space used: 18985756185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)