BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0027.p (767 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_952026.1| ATPase, AAA family [Geobacter sulfurreducens PC... 521 e-146 ref|ZP_00110796.1| COG0464: ATPases of the AAA+ class [Nostoc pu... 443 e-123 ref|ZP_00019915.1| hypothetical protein [Chloroflexus aurantiacus] 308 3e-82 ref|ZP_00110040.1| COG0464: ATPases of the AAA+ class [Nostoc pu... 305 2e-81 ref|NP_928975.1| hypothetical protein [Photorhabdus luminescens ... 256 2e-66 >ref|NP_952026.1| ATPase, AAA family [Geobacter sulfurreducens PCA] gb|AAR34299.1| ATPase, AAA family [Geobacter sulfurreducens PCA] Length = 743 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 296/734 (40%), Positives = 432/734 (58%), Gaps = 30/734 (4%) Query: 53 YTSNHEHLAEELQRLDLRLKLRMLEAPQLDSE-------LALMNEEIRSLLDAYSADEDD 105 Y E++ +EL+ LDL ++ R+ + ++ L L ++EI LL + Sbjct: 17 YADGPEYIQDELRWLDLLIRYRLDGRNRGGADPFGQLRGLVLSDDEINGLLSGDAGGTPG 76 Query: 106 GNL-LHVKLSMLEQRIAARLEASSGQEVQLMLPQVASLLNLSGLEVSILVACLAPELDRK 164 + +L+ L +A R A+ L L ++ +LS E L+ CLAPELD K Sbjct: 77 ASPECGAELAELAAEVADRRSATLRMGTALPLADLSRTFHLSPFEEKCLLICLAPELDPK 136 Query: 165 YERIYAFLQNDMSDQRPTAGFVLGLFTGSVEERLAARLLFDVNAPLMKL-LLERRGEYGD 223 YE++YA+L +D++ +RP+ G +L L S ER+AAR +FD APL K L++ D Sbjct: 137 YEKLYAYLHDDVTRRRPSIGLILDLLCTSFRERVAARTVFDPRAPLTKYRLVQFIQATPD 196 Query: 224 SRIPLIARPLKLEDWTVNMLLGYEVLDERLAKVASLSTLAIPQQAGFPEELE-------Q 276 + +R L L +LG+ D LA+ L +P G +E + Sbjct: 197 GPVSFPSRQLMLNGRIAGYVLGHAQPDPHLAEAVRL---VLPGPGGTVSPVEDRNRERAR 253 Query: 277 SLLR-FVKHYSSGKERRTGSLLYCSGPDEAGKLSGIREVCGKLGLSVLAADMDKLLLPEA 335 L+R + ++SG+ R +L+C GP AGK + +C LGL +L AD++++L Sbjct: 254 QLVRAHLAVHASGESR---LVLFCRGPRGAGKRELVESLCRDLGLWLLVADVERMLAGSL 310 Query: 336 NFSEXXXXXXXXXXXENTALCFTGFDSIVTEDDRHXXXXXXXXXXXXAYVPLTFILGEAQ 395 F E + +C G D+++ D+ H + +TF+ Sbjct: 311 PFGEMAWLLGREAALQPAVVCLEGMDALLAGDNDHTSELTSLMDAIRTFCRVTFVCSGRP 370 Query: 396 WGISLTGVQLNFMQIDLPVPDEAARKQAWTTFGQEYRLSPQMDLAD-FSGSFRFTSGQIR 454 W F+++D P+PDE RK+ W L+ M AD +G+FRFT GQIR Sbjct: 371 WRPRDRHPSDVFIELDFPLPDEGTRKRLWEDGLSGSPLAAGMGAADVLAGTFRFTPGQIR 430 Query: 455 AALAGGENIAVWNG----SSGAEVSVSDLYQACYFQSSRKIQALATKIRAMYTWDMLVLP 510 ALA ++AVW+G S G+E + L+ AC +S ++ LA ++ ++T D +VLP Sbjct: 431 QALADARDLAVWHGGDEASGGSEADL--LHAACRARSHTRLGTLARRLEPVHTLDDIVLP 488 Query: 511 GEQLSQLREICRQVKYRPLVYGEWGFAGRLSLGRGLNILFSGPPGSGKTMAAEVIATELN 570 Q++QLREIC QV+YR LV+G+WGF +LS G+GL +LF+GPPG+GKTMAA VIA EL Sbjct: 489 ALQMAQLREICAQVRYRHLVFGQWGFDRKLSSGKGLTVLFTGPPGTGKTMAAAVIARELG 548 Query: 571 LEIYKIDVSQIVSKYIGETEKNLSRIFDEAETSNAILFFDEADALFGKRSEVKDAHDRYA 630 LE+Y+ID+SQ+VSKYIGETEKNL RIF EAET+ AILFFDEADALFG+RSEVKDAHDRYA Sbjct: 549 LELYRIDLSQVVSKYIGETEKNLERIFAEAETAGAILFFDEADALFGRRSEVKDAHDRYA 608 Query: 631 NVEISYLLQKMEEYTGIVILATNLNQNLDDAFARRLHFKLEFPFPEKKQRGLIWRGMFPR 690 N+EI YLLQ+MEEY+GI ILATNL QNLD+AF RR+ +EFPFP+++ R +IW+ +FP Sbjct: 609 NIEIGYLLQRMEEYSGISILATNLRQNLDEAFTRRIRIVVEFPFPDEEYREMIWQRIFPP 668 Query: 691 GAPLDPDMDYDFMADKFILAGGNIKNIALNAAFYAAHEGCPIGMKQIMLAAKREYLKLGR 750 P+ D+D F+A +F ++GG+I+N+AL A F+AA EG P+ M ++ A RE K G+ Sbjct: 669 ELPVGDDVDLGFLARRFRISGGDIRNVALGAVFFAAEEGRPLAMAHLVRALGRELRKTGK 728 Query: 751 TFLQSDYAPYHKLI 764 + ++ Y +++ Sbjct: 729 PCTREEFGDYLEML 742 >ref|ZP_00110796.1| COG0464: ATPases of the AAA+ class [Nostoc punctiforme] Length = 742 Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust. Identities = 261/642 (40%), Positives = 358/642 (55%), Gaps = 24/642 (3%) Query: 135 MLPQVASLLNLSGLEVSILVACLAPELDRKYERIYAFLQNDMSDQRPTAGFVLGLFTGSV 194 +L + + +LS ++ IL LAPELDR YER+YA+LQ+DMS+++PT VL L SV Sbjct: 105 LLAWLQNTFSLSSFDLDILAIALAPELDRHYERVYAYLQDDMSNKKPTVDMVLNLLCSSV 164 Query: 195 EERLAARLLFDVNAPLM-KLLLERRGEYGDSRIPLIARPLKLEDWTVNMLLGYEVLDERL 253 E+L+ R F N+PL+ LL E + L++ L L+ V +LL LD RL Sbjct: 165 PEKLSRRKHFTTNSPLIYHRLLHLCPESHQQQSTLLSHHLILDSQVVRLLLHQPGLDSRL 224 Query: 254 AKVASLSTLAIPQQAGFPEELEQSLLRFVKHYSSGKERRTGSLLYCSGPDEAGKLSGIRE 313 L I + + Q+ L + +++ LLY G D G G+R Sbjct: 225 TSCCQLLEPTIYFDTLYLKADVQTALEAL--LIEDWQKQQPLLLYFQGTDACG---GLRL 279 Query: 314 VCGK----------LGLSVLAADMDKLLLPEANFSEXXXXXXXXXXXENTALCFTGFDSI 363 GK L + +L D+ KL+ +ANF E N L FD + Sbjct: 280 RTGKRRTAQILAKTLEVPLLVVDLAKLVEDKANFEEKLQLLWREAWFFNRLLYLDNFDIL 339 Query: 364 VTEDDRHXXXXXXXXXXXXAYVPLTFILGEAQWGISLTGVQLNFMQIDLPVPDEAARKQA 423 ++ H + +T + G W + TG + + VP+ + R++ Sbjct: 340 YLQE--HQILYQSFLRELEKNIGITILSGVKNWIPTATGAT-GLITVPFTVPESSQRREC 396 Query: 424 WTTFGQEYRLSPQ-MDLADFSGSFRFTSGQIRAALAGGENIAVWNGSSGAE----VSVSD 478 W T + ++ + +L F T QI A+A N A W + S + Sbjct: 397 WQTHLKAAHITLEDRELDVLCDRFLLTPDQIADAVATAYNTARWQQIDSTQEKPLPSFLN 456 Query: 479 LYQACYFQSSRKIQALATKIRAMYTWDMLVLPGEQLSQLREICRQVKYRPLVYGEWGFAG 538 L A QS + LA KI YTWD +VL Q++QL++IC++ +YR LV+ +WGFA Sbjct: 457 LCSAARAQSGHDLATLARKIEPKYTWDDIVLHPNQITQLKDICKEAEYRNLVHQKWGFAD 516 Query: 539 RLSLGRGLNILFSGPPGSGKTMAAEVIATELNLEIYKIDVSQIVSKYIGETEKNLSRIFD 598 +LSLG+GLN+LFSG G+GKTMAAEVIA +L L++YKID+SQIVSKYIGETEKNL+RIF Sbjct: 517 KLSLGKGLNVLFSGSSGTGKTMAAEVIAHQLQLDLYKIDLSQIVSKYIGETEKNLNRIFT 576 Query: 599 EAETSNAILFFDEADALFGKRSEVKDAHDRYANVEISYLLQKMEEYTGIVILATNLNQNL 658 A SNAILFFDEADALFGKRSEV+DA DRYAN+E+ YLLQKMEEY GI IL TNL N+ Sbjct: 577 AATNSNAILFFDEADALFGKRSEVQDARDRYANIEVGYLLQKMEEYEGIAILTTNLRNNI 636 Query: 659 DDAFARRLHFKLEFPFPEKKQRGLIWRGMFPRGAPLDPDMDYDFMADKFILAGGNIKNIA 718 D+AF RRL F +EF P+ K R IW+ +FP+ AP P++D + +A F + G NI+ IA Sbjct: 637 DEAFERRLRFIIEFTLPDTKNRHSIWQRIFPKNAPCSPNLDLELLAQNFEITGANIRYIA 696 Query: 719 LNAAFYAAHEGCPIGMKQIMLAAKREYLKLGRTFLQSDYAPY 760 L AAF AA +G I M ++ A +REY K+G+ D Y Sbjct: 697 LTAAFLAADDGGVIEMVHLIRALRREYQKMGQVLRDKDLGQY 738 >ref|ZP_00019915.1| hypothetical protein [Chloroflexus aurantiacus] Length = 651 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 162/349 (46%), Positives = 219/349 (62%), Gaps = 13/349 (3%) Query: 408 MQIDLPVPDEAARKQAWTTFGQEYRLSPQMDLADFSGSFRFTSGQIRAALAGGENIAVWN 467 ++ ++P PD ++ W E+ S L F + IRA + + Sbjct: 299 VRFEVPQPDRREQQALWQQILNEHGRSLNGHLDRLLQQFTLGANAIRA-------VTMTT 351 Query: 468 GSSGAEVSVSDLYQACYFQSSRKIQALATKIRAMYTWDMLVLPGEQLSQLREICRQVKYR 527 G +D + AC Q ++ LA +I WD LVLP E L LR++ QV+ R Sbjct: 352 TGDGE----ADWWDACRLQVRTRLDGLAQRIETRVGWDDLVLPEEHLMTLRQMVAQVRQR 407 Query: 528 PLVYGEWGFAGRLSLGRGLNILFSGPPGSGKTMAAEVIATELNLEIYKIDVSQIVSKYIG 587 VY EWGF R G G++ LF+GP G+GKT+AAEV+A EL L++Y+ID+S +VSKYIG Sbjct: 408 VRVYEEWGFGLRDRRGLGISALFAGPSGTGKTLAAEVLANELRLDLYRIDLSAVVSKYIG 467 Query: 588 ETEKNLSRIFDEAETSNAILFFDEADALFGKRSEVKDAHDRYANVEISYLLQKMEEYTGI 647 ETEKNL RIFD AE +AIL FDEADALFG+RSEVKD+HDRYAN+E+SYLLQ+ME Y G+ Sbjct: 468 ETEKNLRRIFDAAEGGSAILLFDEADALFGRRSEVKDSHDRYANLEVSYLLQRMEAYQGL 527 Query: 648 VILATNLNQNLDDAFARRLHFKLEFPFPEKKQRGLIWRGMFPRGAPLDPDMDYDFMADKF 707 IL TN+ Q +D AF RR+ F + FPFP+ QR IW+ +FP PL +D+ +A + Sbjct: 528 AILTTNMKQAIDTAFLRRIRFIVNFPFPDTAQRQRIWQRVFPPHTPL-AGLDWGKLA-QL 585 Query: 708 ILAGGNIKNIALNAAFYAAHEGCPIGMKQIMLAAKREYLKLGRTFLQSD 756 LAGGNI++IALNAAF AA G P+ M I+ AA+ EY +L + +++ Sbjct: 586 NLAGGNIRSIALNAAFLAAEAGEPVQMAHILSAARSEYARLEKPLTETE 634 >ref|ZP_00110040.1| COG0464: ATPases of the AAA+ class [Nostoc punctiforme] Length = 662 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 209/630 (33%), Positives = 313/630 (49%), Gaps = 37/630 (5%) Query: 136 LPQVASLLNLSGLEVSILVACLAPELDRKYERIYAFLQNDMSDQRPTAGFVLGLFTGSVE 195 L +V + +LS E +L+ C EL+ + ++ A D+ PT L Sbjct: 64 LERVCKIFSLSSFERDLLLLCAGMELNGDFAKLCAITHGDLQRAYPTLSLALSALPN--- 120 Query: 196 ERLAARLLFDVNAPLMKLLLERRGEYGDSRIPLIARPLKLEDWTVNMLLGYEVLDERLAK 255 + +D AP L R + GD L P+++++ ++ L G + LDERLA Sbjct: 121 ------VHWDAIAPNAPLRHWRLIQIGDGH-ALTLSPVRIDERILHYLTGIQYLDERLAG 173 Query: 256 VASLSTLAIPQQAGFPEELEQSLLRFVKHYSSGKERRTGSLLYCSGPDEAGKLSGIREVC 315 + +P+ + + R +S + + ++ S + K + +C Sbjct: 174 IIE----PLPEVSDLVPSHQDLAERVAAVWSQADKINSLPIVQLSSSETTSKRAIAAAIC 229 Query: 316 GKLGLSVLAADMDKLLLPEANFSEXXXXXXXXXXXENTALCFTGFDSIVTEDDRHXXXXX 375 GLS+ + L + AL E D + Sbjct: 230 QLQGLSLWVMPAQLIPLVPSELDNLIRLWTRETILSKCALLID-----CNELDNNDMARL 284 Query: 376 XXXXXXXAYVPLT--FILGEAQWGISLTGVQLNFMQIDLPVPDEAARKQAWT-TFGQEYR 432 ++ T F++ ++ I L G +L + D+ P + W G Sbjct: 285 NAIAR---FIERTKGFLIVTSRERIGL-GQRL-VVNFDVHQPTSKEQGTVWQDALGS--- 336 Query: 433 LSPQMD--LADFSGSFRFTSGQIRAALAGGENIAVWNGSSGAEVSVSDLYQACYFQSSRK 490 ++ QM+ + F ++ IRAA A E +++ S L+ AC Q+ + Sbjct: 337 MASQMNGQVKTLVDQFNLSAATIRAACA--EAAGQLAQKPDNDIT-SILWDACRVQARPR 393 Query: 491 IQALATKIRAMYTWDMLVLPGEQLSQLREICRQVKYRPLVYGEWGFAGRLSLGRGLNILF 550 + LA +I W+ LVLP Q LREI V+ R +VY WGF G+ + G G++ LF Sbjct: 394 LDELAQRIEPSGDWEDLVLPEAQKQVLREIAAHVRQRSIVYNNWGFGGKSARGLGISALF 453 Query: 551 SGPPGSGKTMAAEVIATELNLEIYKIDVSQIVSKYIGETEKNLSRIFDEAETSNAILFFD 610 +G G+GKT+ AEV+A +L L++Y+ID+S +VSKYIGETEKNL R+FD AE IL FD Sbjct: 454 AGASGTGKTLGAEVLAHKLRLDLYRIDLSSVVSKYIGETEKNLRRVFDAAEQGGVILLFD 513 Query: 611 EADALFGKRSEVKDAHDRYANVEISYLLQKMEEYTGIVILATNLNQNLDDAFARRLHFKL 670 EADALFGKRSEVKDA DRYAN+E+SYLLQ+ME Y G+ +L TNL +D AF RR+ F + Sbjct: 514 EADALFGKRSEVKDARDRYANIEVSYLLQRMESYPGLAVLTTNLKSAIDTAFLRRIRFVV 573 Query: 671 EFPFPEKKQRGLIWRGMFPRGAPLDPDMDYDFMADKFILAGGNIKNIALNAAFYAAHEGC 730 +FPFP+ QR IWR +FP P D+D +A + +AGGNI+NIALNAAF AA G Sbjct: 574 QFPFPDTTQRAEIWRRVFPADTP-TADLDALQLA-RLNVAGGNIRNIALNAAFLAADAGE 631 Query: 731 PIGMKQIMLAAKREYLKLGRTFLQSDYAPY 760 + MK ++ AA+ EY KL + ++ + Sbjct: 632 AVQMKHVLRAAQTEYSKLEKPLTDAEVGGW 661 >ref|NP_928975.1| hypothetical protein [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE13986.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 688 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 187/620 (30%), Positives = 292/620 (47%), Gaps = 26/620 (4%) Query: 136 LPQVASLLNLSGLEVSILVACLAPELDRKYERIYAFLQNDMSDQRPTAGFVLGLFTGSVE 195 L Q+ L+ E +L+ L P D +Y ++A L + Q P+ + LF+ Sbjct: 87 LSQLIERFELTEFERDVLLLGLLPHFDSRYHALFAALHGNSRKQWPSFDLAIELFSQRQG 146 Query: 196 ERLAARLLFDVNAPLMKLLLERRGEYGDSRIPLIARPLKLEDWTVNMLLGYEVLDERLAK 255 +R + F PL+ L R + +S + L+ + + L + Sbjct: 147 DRPLRQNSFLPQTPLISHQLLRLNNHEES--------IWLQTQFLTHSAVWHFLSGQRVI 198 Query: 256 VASLSTLAIPQQAGFPEELEQSLLRFVKHYSSGKERRTGSLLYCSGPDEAGKLSGIREVC 315 + L+T A + QSL ++ K L+ G ++ + + + Sbjct: 199 LPPLTTCAYWHSSASHRWYPQSLYPSLEKILLNKTDEIRPLVILRGKQDSARELAVSNMM 258 Query: 316 GKLGLSVLAADMDKLLLPEANFSEXXXXXXXXXXXENTALCFTGFDSIVTEDDRHXXXXX 375 +S L D+ +L PE N S + L F + +D++ Sbjct: 259 ALHDISTLTLDLAQL--PEENNSNLLIDAVREARLHDACLLIRNFS--LLKDEKKILHSE 314 Query: 376 XXXXXXXAYVPLTFILGEAQ----WGISLTGVQLNFMQIDLPVPDEAARKQAWTTFGQEY 431 A + + L E Q W L VQ+N + L A K+A Sbjct: 315 FSTLLNQAKLRVV-CLAEPQDSLVWIKHLPIVQINMPALTL------ADKKAMLEANLSD 367 Query: 432 RLSPQMDLADFSGSFRFTSGQIRAALAGGENIAVWNGSSGAEVSVSDLYQACYFQSSRKI 491 ++ ++++ F FT+ + L + G ++ +DL +A F++ + Sbjct: 368 NIAQKINITQLCQRFSFTAETLPQILQEANQYQILRQPEG-QLEETDLRKALSFRAQQNF 426 Query: 492 QALATKIRAMYTWDMLVLPGEQLSQLREICRQVKYRPLVYGEWGFAGRLSLGRGLNILFS 551 LA +I + + LV+ QL+EI + YR + GF ++ G G++ LF Sbjct: 427 GKLAQRITPKRSLNDLVISDVLTQQLKEIIAAIHYRDQILAT-GFQEKIGYGTGISALFY 485 Query: 552 GPPGSGKTMAAEVIATELNLEIYKIDVSQIVSKYIGETEKNLSRIFDEAETSNAILFFDE 611 G G+GKTMAAEVIA L +++ K+D+S +V+KYIGETEKN+SRIFD AE + +LFFDE Sbjct: 486 GESGTGKTMAAEVIAGHLGVDLIKVDLSTVVNKYIGETEKNISRIFDLAEADSGVLFFDE 545 Query: 612 ADALFGKRSEVKDAHDRYANVEISYLLQKMEEYTGIVILATNLNQNLDDAFARRLHFKLE 671 ADALFGKRSE KDA DR+AN+E+SYLLQ++E Y G+VILATN +LD AF RR F Sbjct: 546 ADALFGKRSETKDAQDRHANIEVSYLLQRLENYPGLVILATNNRSHLDSAFNRRFTFITR 605 Query: 672 FPFPEKKQRGLIWRGMFPRGAPLDPDMDYDFMADKFILAGGNIKNIALNAAFYAAHEGC- 730 F +P++ R +W+ ++P L +D+ +A + L G NI+NIAL A+ A ++ C Sbjct: 606 FAYPDEMLRKKMWQVIWPEQIKLSDTIDFTHLAKRADLTGANIRNIALLASMLAKNDHCD 665 Query: 731 PIGMKQIMLAAKREYLKLGR 750 I K I A E K GR Sbjct: 666 QIENKHINRAITLELNKTGR 685 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,055,627,049 Number of extensions: 43115545 Number of successful extensions: 135135 Number of sequences better than 1.0e-05: 1583 Number of HSP's gapped: 133838 Number of HSP's successfully gapped: 1737 Length of query: 767 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 633 Effective length of database: 393,414,312 Effective search space: 249031259496 Effective search space used: 249031259496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)