BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0023.p (147 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_952030.1| conserved hypothetical protein [Geobacter sulfu... 179 2e-44 ref|NP_107034.1| unknown protein [Mesorhizobium loti MAFF303099]... 150 1e-35 ref|ZP_00110802.1| hypothetical protein [Nostoc punctiforme] 114 5e-25 ref|NP_952033.1| conserved hypothetical protein [Geobacter sulfu... 98 5e-20 ref|ZP_00019918.1| hypothetical protein [Chloroflexus aurantiacus] 82 4e-15 >ref|NP_952030.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gb|AAR34303.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] Length = 145 Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 84/142 (59%), Positives = 113/142 (79%), Gaps = 2/142 (1%) Query: 6 RLDPYRNYRFRVVIDGIQTAAFADATIPDTSTEAVDYREGIDAPHARKLSGLTKFGNITL 65 R DPYRN+RF V IDGI A F++ T+PDTST+ V+YREG + P RKLSGL KFGN+TL Sbjct: 4 RKDPYRNFRFLVEIDGIVQAGFSEVTVPDTSTDVVEYREGSEEPRLRKLSGLNKFGNVTL 63 Query: 66 KKGLTDSLELYNWRKSIEDKGALKN-RKSLSIILVDEEGNDKAQWDILEAWPIKYDVSAL 124 K G TDSLE +NWRK + +G +K+ RK++++IL+DEEGN A+W+ AWP KYD + L Sbjct: 64 KWGTTDSLEFFNWRKLVM-QGKMKDARKNMAVILMDEEGNPAARWEFENAWPNKYDPADL 122 Query: 125 SAKGNEVSVESMELVHEGVRRV 146 +AKGN+V++ES+E+VHEG++RV Sbjct: 123 NAKGNDVAIESVEIVHEGMKRV 144 >ref|NP_107034.1| unknown protein [Mesorhizobium loti MAFF303099] dbj|BAB52820.1| unknown protein [Mesorhizobium loti] Length = 149 Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/146 (51%), Positives = 103/146 (70%), Gaps = 4/146 (2%) Query: 6 RLDPYRNYRFRVVIDGIQTAAFADATIPDTSTEAVDYREGIDAPHARKLSGLTKFGNITL 65 R+DP RN+RF + ID + A F++ I +T+ EAVDYREG D PH RKLSGLTK+G+ITL Sbjct: 4 RIDPIRNFRFLLEIDNVTRAGFSEVAIAETTIEAVDYREGTDPPHMRKLSGLTKYGSITL 63 Query: 66 KKGLT---DSLELYNWRKSIEDKGALKNRKSLSIILVDEEG-NDKAQWDILEAWPIKYDV 121 K G+T +SLEL+ W + + R++++I + DE G ++A++ I EAWPIKYD Sbjct: 64 KAGMTTDANSLELFKWHNDVSVGLISERRRNIAISVRDESGKTEQARFVISEAWPIKYDP 123 Query: 122 SALSAKGNEVSVESMELVHEGVRRVK 147 S LS KGNEV +E +EL +EG+ RVK Sbjct: 124 SDLSGKGNEVMIELLELANEGIERVK 149 >ref|ZP_00110802.1| hypothetical protein [Nostoc punctiforme] Length = 146 Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 89/137 (64%), Gaps = 3/137 (2%) Query: 8 DPYRNYRFRVVIDGIQTAAFADATIPDTSTEAVDYREGID-APHARKLSGLTKFGNITLK 66 DPY Y F V DGI A F + + + +A YREG D A R++ GL +GNITLK Sbjct: 9 DPYSGYNFWVEWDGIVHAGFRECSGLTATRKAGTYREGTDKALSQRQIPGLNTYGNITLK 68 Query: 67 KGLTDSLELYNWRKSIEDKGALKNRKSLSIILVDEEGNDKAQWDILEAWPIKYDVSALSA 126 +G+TD+ EL+ W K +++ +R++LSIIL +++G +K +W++ +WP ++ +A Sbjct: 69 RGVTDNKELWEWHKKLQN--GETDRRNLSIILANDQGEEKIRWNLENSWPTIWNAPGFNA 126 Query: 127 KGNEVSVESMELVHEGV 143 +EV++E++ELVHEG+ Sbjct: 127 TSDEVAIETLELVHEGI 143 >ref|NP_952033.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gb|AAR34306.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] Length = 146 Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 83/144 (57%), Gaps = 2/144 (1%) Query: 1 MATGKRLDPYRNYRFRVVIDGIQTAAFADATIPDTSTEAVDYREGIDAPHARKLSGLTKF 60 MA R DPY +RF V ++G+ FA+ + TE +YREG H KL +T++ Sbjct: 3 MALDNRKDPYGAFRFLVELEGLVVGGFAEVSGLQAETEVEEYREGGVNEHPHKLRKITRY 62 Query: 61 GNITLKKGLTDSLELYNWRKSIEDKGALKNRKSLSIILVDEEGNDKAQWDILEAWPIKYD 120 N+ L++G+TD L+ W + + +R++ ++IL+D EGN + + A+P+K++ Sbjct: 63 PNLVLRRGITDCRVLWEWYRDV--IAGTVSRRNGAVILMDREGNPAWRMEFSGAYPVKWE 120 Query: 121 VSALSAKGNEVSVESMELVHEGVR 144 L A GN ++E +ELVH G++ Sbjct: 121 GPELKADGNATAIEKVELVHNGLK 144 >ref|ZP_00019918.1| hypothetical protein [Chloroflexus aurantiacus] Length = 174 Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 9/152 (5%) Query: 3 TGKRLDPYRNYRFRVVIDGIQTAAFADATIPDTSTEAVDYREGIDAPHARKLSGLTKFGN 62 +R DPY+N++FR+ DG A + + +TE V++REG DA + RK G TK+ Sbjct: 7 NAQRFDPYKNFKFRIKWDGRYVAGVSKVSALKRTTEVVEHREGGDASNVRKSPGRTKYEP 66 Query: 63 ITLKKGLTDSLELYNWRKSIEDKG-------ALKN-RKSLSIILVDEEGNDKAQWDILEA 114 ITL++G+T E W + + G +LK+ RK + I + +E G + + Sbjct: 67 ITLERGVTHDTEFEKWANKVWNYGSGLGAEVSLKDFRKDIIIEVYNEAGQLAIAYKVYRC 126 Query: 115 WPIKYD-VSALSAKGNEVSVESMELVHEGVRR 145 W +Y + L A N V+++S++L +EG R Sbjct: 127 WVSEYQALPELDANANAVAIQSIKLENEGWER 158 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 206,064,796 Number of extensions: 7832230 Number of successful extensions: 14728 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 14721 Number of HSP's successfully gapped: 27 Length of query: 147 Length of database: 757,237,578 Length adjustment: 107 Effective length of query: 40 Effective length of database: 466,721,985 Effective search space: 18668879400 Effective search space used: 18668879400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 120 (50.8 bits)