BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0569.0015.p
         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_616991.1| predicted protein [Methanosarcina acetivorans s...   135   3e-31

>ref|NP_616991.1| predicted protein [Methanosarcina acetivorans str. C2A]
 gb|AAM05471.1| predicted protein [Methanosarcina acetivorans str. C2A]
          Length = 94

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 78/92 (84%)

Query: 40  ILDGALSANVKIMGQPAATVDSTATNTPAHVPQGGPFQKPPTNQGKIIAGSASVKINGKM 99
           I++G LS++VKIMG PAATVDSTA+NTP H+PQGGPFQKPP+N+  I  GS +V+INGKM
Sbjct: 3   IINGNLSSDVKIMGMPAATVDSTASNTPPHIPQGGPFQKPPSNKATIKLGSTTVRINGKM 62

Query: 100 AARHSDPALTCNDPADLPVGKVVAAGTVLIGG 131
           AAR+ D A+TCNDP+DLP G V+A GTV IGG
Sbjct: 63  AARNGDMAMTCNDPSDLPSGTVLAVGTVFIGG 94


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 169,701,765
Number of extensions: 5940992
Number of successful extensions: 11413
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11415
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 757,237,578
Length adjustment: 94
Effective length of query: 37
Effective length of database: 502,018,272
Effective search space: 18574676064
Effective search space used: 18574676064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)