BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0013.p (882 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_952041.1| conserved hypothetical protein [Geobacter sulfu... 241 6e-62 ref|ZP_00110810.1| hypothetical protein [Nostoc punctiforme] 203 2e-50 ref|NP_107044.1| hypothetical protein mlr6562 [Mesorhizobium lot... 132 3e-29 ref|NP_628418.1| hypothetical protein SCD8A.17c [Streptomyces co... 105 5e-21 ref|NP_952042.1| conserved hypothetical protein [Geobacter sulfu... 99 3e-19 >ref|NP_952041.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gb|AAR34314.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] Length = 1119 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 166/570 (29%), Positives = 239/570 (41%), Gaps = 114/570 (20%) Query: 379 LGWEYWNGKEWLGIGSLEETLDXXXXXXXXXXXXXXCLTGSGMLSFQCPG-IKPLTLNGE 437 L WEYWNG W I + ++ L +G ++F CP + + ++G+ Sbjct: 446 LSWEYWNGTGWCAISDVTDS--------------TGGLLATGEVTFTCPADMAEVEVSGQ 491 Query: 438 ERYWIRARITGGNYGEEAKYEYQDEEVKLGEGSIKVAQLKVTQATYAPPSIRRLSIAYSH 497 +WIR R++ G+YG E ++ + A + PP + R+++++ Sbjct: 492 RNWWIRVRLSSGDYGRE----------------FEIVNGQAVAAGFTPPRLGRITLSWDG 535 Query: 498 T---LEGHPQTVLTENNFSFADKTAACLAEGEYFKPFYPCAELEPTFYLGFDRDISNLPV 554 T G P ++LT NN + D A L G F+PF P A+L P FY GFDR ++ P+ Sbjct: 536 TDPSAMGEPDSILTRNNLEW-DDGLAVLRTGAVFRPFRPLADLRPAFYAGFDRPLAKGPI 594 Query: 555 SLFFPL---NGEQLRRPVVAWEYWDGR--RWLTLSVNDEIRGFTRREILQFAVPTDIAKR 609 L+ L + + RP V WE +D WL L D G TR I++ VP Sbjct: 595 GLYLDLAEIDYARDFRPRVQWEVYDAGACEWLRLDAEDGTAGLTRAGIVRVVVPEGGVPA 654 Query: 610 PLFGTEQYWIRA------------------RLDEGRFEI--------------------- 630 PLFGT +W+RA RL G I Sbjct: 655 PLFGTRLHWLRAVLVAGEYAPTALGAGLPYRLRRGYLNIPRIIGRPAHLKGSILNPARWR 714 Query: 631 ---------FPQVDAIFANAVWARNSNSVAGEIPGSSNGEENQSFQLSKTPVL------- 674 P I+ NA A SV E PGS NG +QSF L++ PV Sbjct: 715 SWRQLPSNSPPIARGIYLNAARALQLTSVRNERPGSGNGLPDQSFTLARKPVFDDQVWVN 774 Query: 675 -----------------PGQRLRVREAPGQGE--WVPWEEVDTFSLSASDGRHYMLDRSS 715 PG+ RV + G+ WV WE D S RHY +DRSS Sbjct: 775 EFGLISAAELDRLAADAPGRVSRVTDREGRVSEVWVRWEGRDDLLASGPLDRHYGIDRSS 834 Query: 716 GTIIFGDGRNGMIPPTGTDNIECDYKYXXXXXXXXXXXXXTKIWDSFSWLDSVTNPVAAD 775 G + FG+G+ G + P GT+N+ Y+ ++ +D V NP Sbjct: 835 GLVSFGNGKRGRVLPAGTNNVRVSYRTGGGAAGNLGWGAIARMRTGIPLVDKVVNPGPCG 894 Query: 776 GGFDQEAAEQAQIRGPHTLKSWDRGVTAEDIEWLVREAMPQIAKVKCLSAMNRDLEFVPG 835 GG + E RGP +L+ DR VT ED E L+RE P +A VKCL + G Sbjct: 895 GGVEGEDISALYRRGPQSLRRRDRAVTVEDYEGLIREQFPGMALVKCLPVCDDRGMTRTG 954 Query: 836 TATIIVVPETDEPKPVPSQELLSEIEAYLC 865 T+I+VP + +P+PS L +E ++ Sbjct: 955 WLTVIIVPRAADDRPIPSAALRRRVEEFVA 984 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/373 (26%), Positives = 163/373 (43%), Gaps = 32/373 (8%) Query: 1 VPTIDKRNQEQLVPELRRLIYQYCSREWTDLTELEADKKVDALVHIFTQMMGKVIGRLNQ 60 +P ID R +V ++R Y EW+ + +A AL +F M+ +V+ RLN+ Sbjct: 5 LPLIDGRTAADVVEKIRATAPFYVP-EWSGGVDGDAGS---ALTGVFGDMVVEVLQRLNR 60 Query: 61 APEKNFISFLNLIGIHPTPPRSAKVPLLFKQKPDADTSSTIPAGTRVSAQP-ENQAEVIF 119 PE++ +FL ++G+ PPR A+ ++F DAD S+ + +GT+V A+ + E++F Sbjct: 61 VPERHLAAFLEVLGLRLLPPRPAETVVVFTLAKDADRSALVASGTQVMAEKTTDHPELLF 120 Query: 120 ETEKDLTVIQPRLVRAVSLDPEEDQWSNQDYLFAEE---PSGQRAKLFKGDSTVV-HRLY 175 ET++++ + R+ S P D ++ +F +G +F G + H LY Sbjct: 121 ETDENVLAVPSRITALYSTIP--DTAGGREKVFGHTEAWTAGSSFTIFHGTENLQEHALY 178 Query: 176 LGHSELLGFEEAGSRLSVYFNKXXXXXXXXXXXXXXXXXXXDMDWFC-FDEEGNTVQLSP 234 L + L S + ++ + + + FD G T+ LS Sbjct: 179 LRQTGLFTVR---SGVEIHLSGVPRALADQVAWSYTDADGRETLFGARFDGAGGTLILS- 234 Query: 235 SMTGIKEDSAWRAVVQ-FDH--LSGVHAKTIAGYEQAERLREWSNKWIFAELKTPITAAD 291 TG R VV D L GV G R+++ + + + A Sbjct: 235 --TGAGRPELGRCVVNGIDGIWLKGVPKVGADGTTALARVKDAVLRTVVGVGTRSLPTAV 292 Query: 292 LMPDIEDIRLELKLVSPVPLMPDMAVNNGTSLDMGKDYYPFGDKPKVNDTFYIACSEAFS 351 + PD+ VP D+ V G D ++ PFGDKP F++A E FS Sbjct: 293 IHPDV-------AFAGDVP--QDLTVTAGG--DFIRNLLPFGDKPMPLAAFHLASREVFS 341 Query: 352 KPGSRITLKIELS 364 K G+RITL+I + Sbjct: 342 KRGARITLRITCA 354 >ref|ZP_00110810.1| hypothetical protein [Nostoc punctiforme] Length = 1181 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 179/647 (27%), Positives = 277/647 (42%), Gaps = 136/647 (21%) Query: 2 PTIDKRNQEQLVPELRRLIYQYCSREWTDLTELEADKKVDALVHIFTQMMGKVIGRLNQA 61 P ID+R E++V + +L+ Q S +W + D AL+ IF +M+ V R+NQ Sbjct: 6 PKIDQRTYEEIVEQTEKLVEQ--STDWKATPGNKTDAG-GALIRIFGRMVKLVSDRINQV 62 Query: 62 PEKNFISFLNLIGIHPTPPRSAKVPLLFKQKPDADTSSTIPAGTRVSAQPENQA--EVIF 119 PEKNF++FL+LIG PP+ AKVPL F + T + +PA T+VSA P A E++F Sbjct: 63 PEKNFLAFLDLIGGELKPPQPAKVPLTFYLAQGSPTDALVPAHTQVSAPPAEGADEEIVF 122 Query: 120 ETEKDLTVIQPRLVRAVSLDPEEDQWSNQDYLFAEEP----SGQRAKLF---KGDSTVVH 172 ET+++L V +L +P +D++S+ + E+ +GQ+ F +GD ++ H Sbjct: 123 ETDRELVVTTTQLQAVFLREPNQDKYSDLSEMLYEKRTLSGTGQQDGAFLALEGDRSITH 182 Query: 173 RLYLGHSELLGFEEAGS-RLSVYFNKXXXXXXXXXXXXXXXXXXXDMDWFCFDEEGNTVQ 231 LY+ E+L E +L + N E N +Q Sbjct: 183 SLYITCPEILALPELKELQLIITTNNTV-------------------------ESVNQLQ 217 Query: 232 LSPSMTGIKEDSAWRAVVQFDHLSGVHAKTI----------AGYEQAERLREWSNKWIFA 281 P + S W+++ + TI A YE L+ + +W+ A Sbjct: 218 TLPLNWSYWDGSQWQSIQAPSQSQNNNQSTITFTFANLPIPAPYE----LQGKTARWLQA 273 Query: 282 ELKTPITAADLMPDIEDIRLELKLVSPVPLMPDMAVNNGTSLDMGKDYYPFGDKPKVNDT 341 L + P +I+ + + L+P++ + N T LD+ KD+YPFG++P++NDT Sbjct: 274 NLNNISSLIGNFPQFTNIQGTIN-IKQSNLIPEVCLFNTTPLDLTKDFYPFGEQPEINDT 332 Query: 342 FYIACSEAFSKPGSRITLKIELSDPEISKLPDTPYVRLGWEYWNGKEWLGIGSLEETLDX 401 FYIA ++ F KP + I++ I L+ K + +++ WE NG W I L Sbjct: 333 FYIALNDTFIKPNATISIDIILT----YKPVNINNLKIVWEIGNGGVWQEIADKNNQLKW 388 Query: 402 XXXXXXXXXXXXXCLTGSGMLSFQCPGIK----PLTLNGEERYWIRARITGGNYGEEAKY 457 + Q P + P T+NGE RYWIRARIT G+YG+ A Sbjct: 389 IAQSSAIQFTEKDTIQA----KLQFPSAENIPSPSTVNGETRYWIRARITQGHYGKAADE 444 Query: 458 E----YQD-----EEVKLGEGSIKVAQL----------------------KVTQA----- 481 Y D +E K G I+V L K+TQ Sbjct: 445 RLYPVYDDLAVLRKEFKQGANEIEVDTLDLFKTGDAIRILPYTEGFSEENKITQIIKETN 504 Query: 482 -------------------------------TYAPPSIRRLSIAYSHTLEGHPQTVLTEN 510 TY PP ++ L + Y TL EN Sbjct: 505 RLKLETGVLNTTLGVGTRIMRKLIITETIPPTYDPPLLKSLKLTYEFTLT-EKAIYCAEN 563 Query: 511 NFSFADKTAACLAEGEYFKPFYPCAELEPTFYLGFDRDISNLPVSLF 557 +F ++ + + F+PF P + EPT YLGFD +N V+L+ Sbjct: 564 DFIYSHPEKSS---TQSFQPFTPTIDREPTLYLGFDNSFNNKTVTLY 607 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/392 (29%), Positives = 180/392 (45%), Gaps = 68/392 (17%) Query: 550 SNLPVSLFFPLNGEQLR--RPVVAWEYWDGRRWLTLSVNDEIRGFTRREILQFAVPTDIA 607 +N P+ +P N +R +P + WEY W L V DE + F++ +++F P D++ Sbjct: 679 TNQPLQQNYPQNTPVIRPQQPQLVWEYSSPLGWQPLGVEDETQAFSQPGLIRFIAPADLS 738 Query: 608 KRPLFGTEQYWIRARLDEGRFEIFPQVDAIFANAVWARNSNSVAGEIPGSSNGEENQSFQ 667 R FG + YW+R R G F + P++ + N +WA + S+ E+ GSSN E NQ F Sbjct: 739 PRENFGKKLYWLRVRWVSGNFRVKPRLRRLLTNTIWAVQAISLQEEVLGSSNYEPNQVFI 798 Query: 668 LSKTPVLPGQRLRVREAP---------------GQGE----WVPWEEVDTFSLSASDGRH 708 + P+L GQ+L ++EA GE WV W+EV F S++ RH Sbjct: 799 ANNIPILMGQQLEIQEAQIPLNIESHRIKVIKDNLGEIDEVWVLWQEVADFYGSSASDRH 858 Query: 709 YMLDRSSGTIIFGDGRNGMIPPTGTDNIECD-YKYXXXXXXXXXXXXXTKIWDSFSWLDS 767 Y LDR +G I FG+G+ GMIPP G +NI Y+ +++ + ++D Sbjct: 859 YTLDRQTGEIRFGNGQAGMIPPRGRNNIRLSFYRTGGGKQGNVTAQTISQLKTTIPYIDR 918 Query: 768 VTNPVAADGGFDQEAAEQAQIRGPHTLKSWDRGVTAEDIEWLVREAMPQIAKVKCLS--- 824 V N AA GG QE ++ + R P L+ DR VT EDI L EA +A+VK ++ Sbjct: 919 VINLEAAAGGAQQETLDRLKERVPKQLRHRDRAVTLEDIADLAYEASTDVARVKVVTPDL 978 Query: 825 -------------------------------------------AMNRDLEFVPGTATIIV 841 M R++ G +++ Sbjct: 979 LTADFSPLNEKLWLDPTKPNVLFEDSLREKLQTINATEAENFEKMMREINRRAGQVKLMI 1038 Query: 842 VPETDEPKPVPSQELLSEIEAYLCERTSAALD 873 +P + + +P PS LL ++E Y+ R + +D Sbjct: 1039 LPYSSDRQPTPSLALLEQVETYIRSRCAGTVD 1070 >ref|NP_107044.1| hypothetical protein mlr6562 [Mesorhizobium loti MAFF303099] dbj|BAB52830.1| hypothetical protein [Mesorhizobium loti] Length = 1562 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 137/562 (24%), Positives = 217/562 (38%), Gaps = 118/562 (20%) Query: 379 LGWEYWNGKEWLGIGSLEETLDXXXXXXXXXXXXXXCLTGSGMLSFQCP-GIKPLTLNGE 437 L WEYWNG W + E+ L SG + F P +KP+ G+ Sbjct: 886 LSWEYWNGTGWWLLPVDEDGTGR--------------LRNSGWVKFVVPTDLKPVDWAGK 931 Query: 438 ERYWIRARITGGNYGEEAKYEYQDEEVKLGEGSIKVAQ-LKVTQATYAPPSIRRLSIAYS 496 +WIRAR+ GG+YG E K + G+ + Q + T PP + IAY+ Sbjct: 932 TNHWIRARLIGGDYGRE-KVVVITRPIP---GTNQTEQTVNRTTEGIQPPFALEVRIAYA 987 Query: 497 HTLEGHPQTVLTENNFSFADKTAACLAEGEYFKPFYP----------------------- 533 E P +LT ++ + D++ A G + F P Sbjct: 988 VDQEVAPTFLLTLDSGTLRDQSDANRMSGTNIEVFAPLGCTLGRFEAGDRAQGLRAETAA 1047 Query: 534 -------------CAELEPT-------------------FYLGFDRDISNLPVSLFFPLN 561 C P YLGF +S+ PV+L F + Sbjct: 1048 KDRGCDDFAAPCTCCAATPAGQADLTGRAVAVGQGGGRALYLGFTSKLSDEPVNLLFVVE 1107 Query: 562 GEQLRRPVVAWEYWD--GRRWLTLSVNDEIRGFTRREILQFAVPTDIAKRPLFGTEQYWI 619 E+ E G R + + +DE R + +++ + + + LFG +W+ Sbjct: 1108 QERPHDASAPMEVHALIGDRLVPVLASDETRALSESGLVKMSFSVEPMQAELFGRNLFWL 1167 Query: 620 RARLDEGRFEIFPQVDAIFANAVWARNSNSVAGEIPGSSNGEENQSFQLSKTPVLPGQ-R 678 R G + P + ++ NAVWAR + ++ E+ GSS GE + L++ P+L Sbjct: 1168 RLT-PRGSSDWLPALKGVYLNAVWARAAETMTRELVGSSAGEPGLTLALARPPLLQDSLE 1226 Query: 679 LRVREAPGQ----------------------GEWVPWEEVDTFSLSASDGRHYMLDRSSG 716 LRVRE G G+WV W +V + A+ R Y LD ++G Sbjct: 1227 LRVREPLGGEERDRLLAEYPDSVVSDAVDLPGDWVLWRQVIDPADCAAADRVYALDEATG 1286 Query: 717 TIIFGDGRNGMIPPTGTDNIECDYKYXXXXXXXXXXXXXTKI-----WDSFSWLDSVTNP 771 TI FGDGR+G IP +G D I ++Y ++ + + +D+V Sbjct: 1287 TIRFGDGRHGAIPSSGPDTI-VAFRYERTEPGVGEAVPANQVVARTPLNLVTPVDNVEAV 1345 Query: 772 VAAD---GGFDQEAAEQAQIRGPHTLKSWDRGVTAEDIEWLVREAMPQIAKVKCLSAMNR 828 A D GG ++ + P L+ R ++A DIE L E + +C R Sbjct: 1346 YAGDQPAGGLAPQSDARVLQFSPARLRHRGRALSARDIEDLALEWSADAVQARCFPQAGR 1405 Query: 829 DLEFVPGTATIIVVPETDEPKP 850 T+++V +P+P Sbjct: 1406 --------VTLVLVMRGRDPQP 1419 >ref|NP_628418.1| hypothetical protein SCD8A.17c [Streptomyces coelicolor A3(2)] emb|CAB77338.1| hypothetical protein SCD8A.17c [Streptomyces coelicolor A3(2)] Length = 652 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 92/330 (27%), Positives = 137/330 (41%), Gaps = 31/330 (9%) Query: 566 RRPVVAWEYWDGRRWLTLSVN-DEIRGFTRREILQFAVPTDIAKRPLFGTEQYWIRARLD 624 R+P + WE W W + V+ D G R + +P G E WIR R+ Sbjct: 200 RQPPLVWEAWTEDGWQSCEVDRDGTGGLNRPGDVVLHIPGGHVLSRNGGHEAGWIRCRVT 259 Query: 625 E---GR--FEIFPQVDAIFANAVWAR----NSNSVAGEIPGSSNGEENQSFQLSKTPVLP 675 E G+ + P + + A + ++ +V E G S G Q +L PV+ Sbjct: 260 EPLSGQPFYTTSPTIRSAEAYTIGGTTGSIHAETVLDEPLGESTGLPGQRLRLEHAPVVA 319 Query: 676 GQRLRVREAPGQGEWVPWEEVDTFSLSASDGRHYMLDRSSGTIIFG------DG---RNG 726 G+ + + W W+ V FS S D H +D ++G I FG DG + G Sbjct: 320 GEPSVLLQTAADDGWQDWQVVPHFSGSHPDDHHITVDATTGEIAFGPAVREADGTLRQYG 379 Query: 727 MIPPTGTDNIECDYKYXXXXXXXXXXXXXTKIWDSFSWLDSVTNPVAADGGFDQEAAEQA 786 +PP G Y+ + S ++ V N AA GG D E E+A Sbjct: 380 AVPPKGAVIRARRYRTGGGRAGNVARGAVQVLRTSIPYVSEVVNREAALGGVDGETIEEA 439 Query: 787 QIRGPHTLKSWDRGVTAEDIEWLVREAMPQIAKVKCLSAMNRDLEFVPGTATIIVVPETD 846 ++R P TL++ +R VT D E L R A P+ A++ CL E+ ++VVP+ Sbjct: 440 KLRAPITLRAQERAVTLRDYEELARRAAPETARITCLEGAEN--EYGAHAVRVLVVPQA- 496 Query: 847 EPKP---------VPSQELLSEIEAYLCER 867 P P VP LL+ I +L ER Sbjct: 497 VPDPGGRLRFEQLVPGDALLNRITRHLDER 526 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 13/165 (7%) Query: 2 PTIDKRNQEQLVPELRRLIYQYCSREWTDLTELEADKKVDALVHIFTQMMGKVIGRLNQA 61 P +D R +Q V + +R I Q EWTD +D V LV M +++ RLN+ Sbjct: 6 PNLDDRRFQQFVDDAKRYIQQRAP-EWTDHNV--SDPGV-TLVETVAHMADQIVYRLNRV 61 Query: 62 PEKNFISFLNLIGIHPTPPRSAKVPLLFKQKPDADTSSTIPAGTRVSA-QPENQAEVIFE 120 P+KN ++FL+L+GI PP +A+ + F + + +P GT V+ + E V+F Sbjct: 62 PDKNHLAFLDLVGITLFPPSAARTDVTFWLSAPQEDAILVPVGTEVATLRTERDEAVVFA 121 Query: 121 TEKDLTVI---QPRLVRAVSLDPEEDQWSN----QDYL-FAEEPS 157 TE+DL ++ RLV VS + D+ ++ +D L FAE P+ Sbjct: 122 TEQDLRIVPCTMGRLVTQVSGEAVSDRTTDLAESKDVLCFAEAPN 166 >ref|NP_952042.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gb|AAR34315.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] Length = 677 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 118/283 (41%), Gaps = 51/283 (18%) Query: 570 VAWEYWD--GRRWLTLSVNDEIRGFTRREILQFAVPTDIAKRPLFGTEQY---------- 617 + WEY G R L L + D G TR + F+VP D+ T Y Sbjct: 212 LVWEYSTEAGYRRLDL-LEDGTTGLTRSGQILFSVPADMTAT----TSPYLPATVPAPRF 266 Query: 618 -WIRARLDE------------------------GRFEIFPQVDAIFANAVWARNSNSVAG 652 IR RL E G +EI P++D+I N V AR + SV Sbjct: 267 PMIRCRLPEESTAVPLPSEGLSACRRAAARQGTGFYEIPPRIDSIRLNTVTARQAVSVVD 326 Query: 653 EIPGSS------NGEENQSFQLSKTPVLPGQRLRVREAPGQGEWVPWEEVDTFSLSASDG 706 E SS NG Q L++ P + G LRVR G +W W E D S Sbjct: 327 ENLVSSSGTDWGNGMPGQVVSLARRPAMEGS-LRVRVLTGT-DWEEWAERDNLDASGPTD 384 Query: 707 RHYMLDRSSGTIIFGDGRNGMIPPTGTDNIECDYKYXXXXXXXXXXXXXTKIWDSFSWLD 766 RH++LD + GTI+FGDGRNG + P G + DY + D Sbjct: 385 RHFVLDPAVGTILFGDGRNGRVLPEGA-RVRADYLSGGGAAGNLRPLASWRFDDPLLADL 443 Query: 767 SVTNPVAADGGFDQEAAEQAQIRGPHTLKSWDRGVTAEDIEWL 809 + N +A GG D E E+A R P L+ DR +T++D E+L Sbjct: 444 AARNDASASGGRDAEPLEEAIARAPLELREVDRAITSDDFEYL 486 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,353,499,492 Number of extensions: 57022634 Number of successful extensions: 111065 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 111039 Number of HSP's successfully gapped: 18 Length of query: 882 Length of database: 757,237,578 Length adjustment: 135 Effective length of query: 747 Effective length of database: 390,699,213 Effective search space: 291852312111 Effective search space used: 291852312111 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)