BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0011.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00110811.1| hypothetical protein [Nostoc punctiforme] 149 5e-35 gb|EAG71381.1| unknown [environmental sequence] 78 2e-13 ref|ZP_00109324.1| hypothetical protein [Nostoc punctiforme] 77 5e-13 ref|NP_924358.1| hypothetical protein gll1412 [Gloeobacter viola... 77 5e-13 ref|NP_628418.1| hypothetical protein SCD8A.17c [Streptomyces co... 75 2e-12 >ref|ZP_00110811.1| hypothetical protein [Nostoc punctiforme] Length = 315 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 157/288 (54%), Gaps = 34/288 (11%) Query: 1 MPLPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQ 60 M LP+PNLDD + L+ DA + IPL P+WT++NP+D GI LIEL AW +EMVLYR++Q Sbjct: 1 MTLPLPNLDDRSYANLLEDAISQIPLEYPEWTDHNPTDTGIILIELLAWLTEMVLYRVNQ 60 Query: 61 VTEESQLQFXXXXX----------XXXXXXXXXTSGIRRGVKQFSECYRAVTAADFQLLA 110 + +E+ F S I++ + + + YRA+T DF+ L Sbjct: 61 IPDENYASFLSLLKGEEWNLPINISTQERQNILQSEIQKTLLEVRKIYRAITPEDFEKLV 120 Query: 111 KQSLLDIPGILDTYPD--LAVRTLCLINTDMENGTGVNKEAFGHVSVVLILQTDNQKDLL 168 + D Y D R CL ++E+ + + A GH+S+V++ + DN Sbjct: 121 ---IFDWNK--SQYADNLKIARVKCLAQCNLESTS--DNFAKGHISLVVVPE-DN----- 167 Query: 169 REMTQIK--QSVKAYLDARKLLTTRVHVVEPDYRDIVIEMTV----SAKDKSIGSTVIDS 222 E+TQ+ + + +LD R+LLTTR+H++EP+Y I IE + A+ +++ + Sbjct: 168 -EITQVNKYEPLFKFLDDRRLLTTRLHILEPEYVSIAIESELVLQDGAQAEAVKTQAEKE 226 Query: 223 ITRFLDPVSGGE--EGLGWLPGRKLYASDLYHLVEGISGIDHVTSVAL 268 + F +P+ + +G GW GR +Y S+LY L++ + G+D+V ++ + Sbjct: 227 VKMFFEPLRSQKYWQGKGWPFGRSVYLSELYKLLDDLEGVDYVENLQI 274 >gb|EAG71381.1| unknown [environmental sequence] Length = 83 Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/63 (57%), Positives = 47/63 (74%) Query: 1 MPLPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQ 60 M P NLDD F +LV +AK LIP + P+WTN+N SDPG+ LIELFAW +E+ L+R++Q Sbjct: 1 MVFPRVNLDDRTFQDLVDEAKRLIPDFLPEWTNHNVSDPGVALIELFAWMTELTLFRLNQ 60 Query: 61 VTE 63 V E Sbjct: 61 VPE 63 >ref|ZP_00109324.1| hypothetical protein [Nostoc punctiforme] Length = 732 Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 35/67 (52%), Positives = 47/67 (70%) Query: 3 LPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQVT 62 LP NLDD FD+LV + IP Y P+WT++N SDPGITLIELFAW ++ +L R +QV Sbjct: 9 LPSSNLDDRAFDDLVEECIMRIPRYCPEWTDHNLSDPGITLIELFAWLTDQMLLRFNQVP 68 Query: 63 EESQLQF 69 ++ + F Sbjct: 69 RKNYVAF 75 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 35/187 (18%) Query: 99 RAVTAADFQLLAKQSLLDIPGILDTYPDLAVRTLCLI--------NTD-MENGTGVNKEA 149 RAVTA DF++L +Q+ + + R ++ NTD + G G+ E Sbjct: 516 RAVTAEDFEVLTQQAGAGAIARVRCLAANSRRQAGIVSLLVVPYANTDAIAQGNGMTPEN 575 Query: 150 FGHVSVVLILQTDNQKDLLREMTQIKQSVKAYLDARKLLTTRVHVVEPDYRDIVIEMTVS 209 F + +++ + +YLD R+LL ++ + EP+Y + ++ ++ Sbjct: 576 FALSNA------------------LQEQIMSYLDERRLLGVQIELQEPNYVGVSVQTEIA 617 Query: 210 ---AKDKSIGSTVID-----SITRFLDPVSGGEEGLGWLPGRKLYASDLYHLVEGISGID 261 A D I S+ ++L+P++GG +G GW GR +Y SD+ L++ G+ Sbjct: 618 LEPAYDNPFAREEIRRNLRVSLYKYLNPLTGGMDGKGWPFGRPVYTSDIVALLQQTPGVR 677 Query: 262 HVTSVAL 268 H+ V L Sbjct: 678 HLGPVLL 684 >ref|NP_924358.1| hypothetical protein gll1412 [Gloeobacter violaceus] dbj|BAC89353.1| gll1412 [Gloeobacter violaceus PCC 7421] Length = 731 Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 36/67 (53%), Positives = 47/67 (70%) Query: 3 LPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQVT 62 LP +LDD FD+LVA+ IP Y P+WT+YN SDPGITLIELFAW ++ +L R +QV Sbjct: 9 LPKSDLDDRTFDDLVAECLLRIPRYCPEWTDYNLSDPGITLIELFAWLTDQMLLRFNQVP 68 Query: 63 EESQLQF 69 + + F Sbjct: 69 RRNYVAF 75 Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 20/181 (11%) Query: 99 RAVTAADFQLLAKQSLLDIPGILDTYPDLAVRTLCLINTDMENGTGVNKEAFGHVSVVLI 158 RAVTA DF++L ++ R CL + GT V +V + Sbjct: 517 RAVTAEDFEILTERGAGGA----------VARVKCLPTPEGAAGT-VRLMVVPQANVDAV 565 Query: 159 LQTDN-QKDLLREMTQIKQSVKAYLDARKLLTTRVHVVEPDYRDIVIEMTVSAK------ 211 + + D Q++Q + YL+ R+L+ +V + EP+Y + ++ V+ + Sbjct: 566 GRGEGLNPDRFTLRPQLQQQILGYLEQRRLMGVQVQLAEPEYVGVAVQTEVALEPEYNNP 625 Query: 212 --DKSIGSTVIDSITRFLDPVSGGEEGLGWLPGRKLYASDLYHLVEGISGIDHVTSVALD 269 + I + ++ RFL+PV+GG + GW GR +Y SD+ L++ +G+ ++ +V L Sbjct: 626 RAQQEILFNLRVALYRFLNPVTGGPDSKGWPFGRPVYPSDIVALLQQTAGVRYLGAVLLF 685 Query: 270 S 270 S Sbjct: 686 S 686 >ref|NP_628418.1| hypothetical protein SCD8A.17c [Streptomyces coelicolor A3(2)] emb|CAB77338.1| hypothetical protein SCD8A.17c [Streptomyces coelicolor A3(2)] Length = 652 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 48/69 (69%) Query: 1 MPLPVPNLDDLGFDELVADAKTLIPLYDPDWTNYNPSDPGITLIELFAWFSEMVLYRIDQ 60 MPLP PNLDD F + V DAK I P+WT++N SDPG+TL+E A ++ ++YR+++ Sbjct: 1 MPLPSPNLDDRRFQQFVDDAKRYIQQRAPEWTDHNVSDPGVTLVETVAHMADQIVYRLNR 60 Query: 61 VTEESQLQF 69 V +++ L F Sbjct: 61 VPDKNHLAF 69 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 28/186 (15%) Query: 99 RAVTAADFQLLAKQSLLDIPGILDTYPDLAVRTLCLINTDMENGTGVNKEAFGHVSVVLI 158 RAVT D++ LA+++ P+ A R CL + E G V V+++ Sbjct: 452 RAVTLRDYEELARRAA----------PETA-RITCLEGAENEYGAHA-------VRVLVV 493 Query: 159 LQT--DNQKDLLREM----TQIKQSVKAYLDARKLLTTRVHVVEPDYRDIVIEMTVSA-K 211 Q D L E + + +LD R+L+ TR+ V P Y+ + + TV A + Sbjct: 494 PQAVPDPGGRLRFEQLVPGDALLNRITRHLDERRLIGTRLAVGPPYYQGVTVVATVHAFR 553 Query: 212 D---KSIGSTVIDSITRFLDPVSGGEEGLGWLPGRKLYASDLYHLVEGISGIDHVTSVAL 268 D + D++ R LDP++GG +G GW GR + +L+ +++ + G++ V V L Sbjct: 554 DVDADRVRRQTHDALYRHLDPLTGGSDGKGWPFGRPVQTGELFAVLQRVPGVELVDEVVL 613 Query: 269 DSPDLL 274 D L Sbjct: 614 HPADPL 619 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 400,825,071 Number of extensions: 15446804 Number of successful extensions: 36617 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 36619 Number of HSP's successfully gapped: 13 Length of query: 290 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 166 Effective length of database: 420,565,302 Effective search space: 69813840132 Effective search space used: 69813840132 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)