BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0569.0008.p
         (65 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00110815.1| hypothetical protein [Nostoc punctiforme]           62   5e-09

>ref|ZP_00110815.1| hypothetical protein [Nostoc punctiforme]
          Length = 77

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 45/56 (80%)

Query: 6  MKEQLEARMNELKAELESGRQMMQELDEKRSNLGYAMTRISGAIQVLEELSAGEEE 61
          MKEQLE R+ ELKAEL SG+++M +L+ K++NL   + RISGAIQ+LEEL++  ++
Sbjct: 1  MKEQLEKRLTELKAELVSGQKVMADLEAKQANLRDTLLRISGAIQILEELTSSTKQ 56


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.304    0.122    0.297 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 73,228,179
Number of extensions: 2095365
Number of successful extensions: 14328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 14331
Number of HSP's successfully gapped: 1
Length of query: 65
Length of database: 757,237,578
Length adjustment: 36
Effective length of query: 29
Effective length of database: 659,494,014
Effective search space: 19125326406
Effective search space used: 19125326406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 120 (50.8 bits)