BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0007.p (1913 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_968588.1| cell wall surface anchor family protein [Bdello... 65 2e-08 gb|EAJ51017.1| unknown [environmental sequence] 65 2e-08 ref|NP_969384.1| cell wall surface anchor family protein [Bdello... 61 3e-07 gb|EAH97569.1| unknown [environmental sequence] 57 7e-06 >ref|NP_968588.1| cell wall surface anchor family protein [Bdellovibrio bacteriovorus HD100] emb|CAE79581.1| cell wall surface anchor family protein [Bdellovibrio bacteriovorus] Length = 1365 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 1786 NVGIGKTPTDDYKLDVNGNLRATNFAQTSSRTFKENIASLPVKKALELLNKLKPVTFNYK 1845 NVGIG T T Y+LDVNG LR +S K +IASL +AL+ + K++ V++N+K Sbjct: 1206 NVGIGTT-TPGYRLDVNGTLRGFGITDSSDIRLKRDIASLSSSEALQRILKIQGVSYNWK 1264 Query: 1846 -AENAKKQNIGFIAEDVPQIFS---TTD---HKSVVLMDIIAVLTTVVQKQQKEAQDMRK 1898 E K+ +GFIA+++ +I+ TD KSV +++ L ++ E ++ Sbjct: 1265 NPEYGKRPQLGFIAQELEKIYPELVETDPQGMKSVNYSHLVSPLVEAIKALYDEVSALKD 1324 Query: 1899 QVNELQVQVKAL 1910 + + ++ AL Sbjct: 1325 SLADKDQRILAL 1336 >gb|EAJ51017.1| unknown [environmental sequence] Length = 487 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 127/521 (24%), Positives = 218/521 (41%), Gaps = 117/521 (22%) Query: 1248 IKGGLTAFSVTGAGNVGIGTYDPKSKLDVQGDTAVAGTLTAVNAVISKDLTVTGNL---- 1303 G LTA + NV D KL V+ D G LTAV+A + ++ ++G L Sbjct: 9 FNGHLTAVDASFTSNV-----DISGKLVVEDDAIFNGHLTAVDASFTSNVDISGKLQVED 63 Query: 1304 --TVNGDTVMINAA---------TLEVEDNIIRVNKYAPQATPVVKNAGLEVFRGGTALP 1352 T NG ++A+ L+VED+ I + T V + F + Sbjct: 64 EATFNGHLTAVDASFTSNVDISGKLQVEDDAI----FNGHLTAVDAS-----FTSNVDIS 114 Query: 1353 AQLIWDETADEWQAGVPNALKAIEFKGHTHPEFAELSGAFTVVSGNVGIGTPAPAAKLDV 1412 +L+ ++ A F GH + +FT NV I + KL V Sbjct: 115 GKLVVEDDA--------------TFNGH----LTAVDASFT---SNVDI-----SGKLQV 148 Query: 1413 NGNVAVSGKLTAVDAAASGTLTAKDATVSGALTAKD-ATVSGVLTAKDAAISGSLTLGQG 1471 +G LTAVDA+ + + +SG L +D AT +G LTA DA+ + ++ + Sbjct: 149 EDEATFNGHLTAVDASFTSNVD-----ISGKLQVEDEATFNGHLTAVDASFTSNVDISGK 203 Query: 1472 IAVDRGADPKAQLLWDESTDAWQAGVAGSMK---QLSYSGHTHPELTALTGVLKIASGNL 1528 + V+ L +++ ++G ++ +++GH L+A+ Sbjct: 204 LHVEDDTIFNGHLAAVDASFTSNVDISGKLQVEEHANFNGH----LSAVDA--------- 250 Query: 1529 GIGTVAPTAKLDVNGNAVVSGKMTVVDTAISGTLTAKDATVSGSLTLSQGIAVERGTDPK 1588 + T+ +D++G VV DT G ++A DA+ + ++ +S + VE T Sbjct: 251 -----SFTSNVDISGKLVVED-----DTTFKGHISAVDASFTSNVDISGKLVVEDETTFN 300 Query: 1589 AQILWNEALDEWQVGVAGSLK---QLAYSGHTHQELTDLSAVLKIASGNLGIGTATPAAK 1645 + +A V ++G L+ +++GH LSA+ + N+ I + K Sbjct: 301 GHLSAVDASFTSNVDISGELQVEDDASFNGH-------LSAMDASFTSNVDI-----SGK 348 Query: 1646 LDVNGNAAVSGKLTVADAA------VSGTLTAKD-AALTGVLTVKD------VSLSGTLT 1692 L V+ +A+ G L+ DA+ +SG L +D G L+ D V +SG L Sbjct: 349 LQVDDDASFKGHLSAMDASFTSNVDISGKLVVEDETTFNGHLSAVDASFTSNVDISGKLV 408 Query: 1693 VP-NATVSATLTAKDAAVSNKLT-AKDAVISGSLAVSQGIE 1731 V +AT L A DA+ + +T + I GS ++ I+ Sbjct: 409 VEDDATFKGHLAAVDASFTTDVTIGGNLTIDGSFNFNEVIQ 449 >ref|NP_969384.1| cell wall surface anchor family protein [Bdellovibrio bacteriovorus HD100] emb|CAE80377.1| cell wall surface anchor family protein [Bdellovibrio bacteriovorus] Length = 1416 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 136/288 (47%), Gaps = 46/288 (15%) Query: 1621 LTDLSAVLKI---ASGNLGIGTATPAAKLDVNGNAAV-SGKLTVADAA-----VSGTLTA 1671 + D S V K+ A+GNLG+GT P L VNG+A + SG T +A+ S ++T Sbjct: 1104 IFDTSNVEKVRISAAGNLGVGTTAPITPLHVNGSAIIGSGNTTFTNASNWVIGSSNSITN 1163 Query: 1672 KDAALTGVLTVKDVSLSGTLTVPNATVSATLTAKDAAVSNKLTAKDAVISGSLAVSQGIE 1731 V+ + S + + T N + S + + +VSN + S +++ I Sbjct: 1164 SGGGNASVMNIIGSSNAISTTAMNFSYSLDVFGRSNSVSNSGNSLVVGRSNTVSAGNSIT 1223 Query: 1732 VGRGTDKKARIAWDTANNVWQAGIEDNLQTLVCKDHVYDELIQVAGAVTVDSSSNVGIGK 1791 +G+ ++ Q G+ D + +T+ S+ GI Sbjct: 1224 IGQSIT-------NSLMGTMQVGLSDTAK------------------MTILSTGRFGINT 1258 Query: 1792 TPTDDYKLDVNGNLRATNFAQTSSRTFKENIASLPVKKALELLNKLKPVTFNYKAENAKK 1851 T + L+VNGN++A ++ TS K+++ +LP+ ALE L KL+ V F +K N + Sbjct: 1259 TAPSE-ALEVNGNVKAASYLYTSDARLKKDVVTLPM--ALENLLKLRGVNFVWK--NNGE 1313 Query: 1852 QNIGFIAEDV----PQIFST---TDHKSVVLMDIIAVLTTVVQKQQKE 1892 + +GFIA++V P++ T + KSV +I+A+L ++++ E Sbjct: 1314 KTVGFIAQEVEAVYPELVRTDKVSGFKSVQYGNIVAILVEALKQEHAE 1361 >gb|EAH97569.1| unknown [environmental sequence] Length = 822 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Query: 1278 GDTAVAGTLTAVNAVISKDLTVTGNLTVNGDTVMINAATLEVEDNIIRVNKYAPQATPVV 1337 GDT ++ N +S+DLT+TGNLTVNG TV +A+ +ED +I +N A + Sbjct: 271 GDTDAISINSSGNVTMSQDLTITGNLTVNGSTVTNSASNTVIEDYLIELNNGAGSNS--- 327 Query: 1338 KNAGLEVFRGGTALPAQLIWDETADEWQAGVPNALKA 1374 + G+ + RG T A + WDE+AD++ G A A Sbjct: 328 NDMGIIMERGSTGDNAFMGWDESADKFVFGTTTATGA 364 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.310 0.129 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 2,768,006,725 Number of extensions: 118609266 Number of successful extensions: 265546 Number of sequences better than 1.0e-05: 60 Number of HSP's gapped: 264702 Number of HSP's successfully gapped: 159 Length of query: 1913 Length of database: 757,237,578 Length adjustment: 140 Effective length of query: 1773 Effective length of database: 377,123,718 Effective search space: 668640352014 Effective search space used: 668640352014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 134 (56.2 bits)