BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0004.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_979438.1| transcriptional regulator, TetR family [Bacillu... 147 1e-34 ref|NP_691557.1| transcriptional regulator [Oceanobacillus iheye... 147 2e-34 ref|NP_656977.1| tetR, Bacterial regulatory proteins, tetR famil... 146 3e-34 ref|NP_832829.1| Transcriptional regulator, TetR family [Bacillu... 142 4e-33 ref|ZP_00103623.1| COG1309: Transcriptional regulator [Desulfito... 130 3e-29 >ref|NP_979438.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] gb|AAS42046.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] Length = 205 Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 4/195 (2%) Query: 6 DLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLMEKMEDQ 65 DLRV+RTK I AF+ L+EEKG + + V+ +T+KA INRGTFY HYQD +DLM K +++ Sbjct: 7 DLRVVRTKTAIRNAFVELIEEKGFDAITVKDITTKANINRGTFYAHYQDKFDLMTKCQEE 66 Query: 66 IIEEMNALPARTIPEQL--LGSG-SVEEPFPSIVEFIRFMNGRHRFFAIFFAQEGT-SFG 121 I+ + +++ + +PE + LGS S PF I + F+N F + +G SF Sbjct: 67 IMYKFSSIAKQKLPEVIADLGSSPSPTMPFIPITSILEFLNENSDFMKAVLSPKGDLSFQ 126 Query: 122 KRLRTLIHSRMYEKLPRQAFNPDALAVPDDYIVAYFSSAHFGVIRHWFESGRTLPPEQVA 181 +L+ + ++E N + L VP Y+ +Y +SAH GVI+ W +G+ PE++A Sbjct: 127 TKLKDFMWKTIFEDTNGALINKENLLVPSQYLASYMASAHIGVIQQWLNNGQKETPEEIA 186 Query: 182 LILTRLVRDGPLLTA 196 IL+ + GP A Sbjct: 187 RILSTIAVHGPFYAA 201 >ref|NP_691557.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] dbj|BAC12592.1| transcriptional regulator (tetR-family) [Oceanobacillus iheyensis HTE831] Length = 205 Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/199 (38%), Positives = 115/199 (57%), Gaps = 4/199 (2%) Query: 2 EKAADLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLMEK 61 E DLR+IRT+K I AF+ L+ +KG + V V+ +T+KA INRGTFY+HY+D +DLM K Sbjct: 3 ENYTDLRIIRTQKAIRTAFVELIRDKGFDAVTVKEITNKAEINRGTFYVHYEDKHDLMIK 62 Query: 62 MEDQIIEEMNALPARTIP---EQLLGSGSVEEPFPSIVEFIRFMNGRHRFFAIFFAQEGT 118 ++++IEEM +L + +P + SG+ + PF V +++N F + +G Sbjct: 63 SQEEVIEEMASLIKKNLPKIIDDFSHSGTTKIPFQLAVIIFQYINDNSNFIQAVLSPKGD 122 Query: 119 -SFGKRLRTLIHSRMYEKLPRQAFNPDALAVPDDYIVAYFSSAHFGVIRHWFESGRTLPP 177 SF RL+ I ++ + D VP YIV+Y +SAH GVI+ W ESGR P Sbjct: 123 LSFHSRLKEFIWGSIFNNNYNNIIDEDKTIVPGKYIVSYIASAHLGVIQEWIESGRKESP 182 Query: 178 EQVALILTRLVRDGPLLTA 196 E +A +L+ + +G A Sbjct: 183 EHMAQVLSTITINGAYYAA 201 >ref|NP_656977.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus anthracis A2012] ref|NP_845440.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] gb|AAP26926.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] Length = 205 Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 4/195 (2%) Query: 6 DLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLMEKMEDQ 65 DLRV+RTK I A + L+EEKG + + V+ +T+KA INRGTFY HYQD +DLM K ++ Sbjct: 7 DLRVVRTKTAIRNALVELIEEKGFDAITVKDITTKANINRGTFYAHYQDKFDLMTKCQED 66 Query: 66 IIEEMNALPARTIPEQL--LGSG-SVEEPFPSIVEFIRFMNGRHRFFAIFFAQEGT-SFG 121 I+ E +++ + PE + LGS S PF I + F+N F + +G SF Sbjct: 67 IMYEFSSIAKKRFPEVIADLGSNPSPTMPFLLITSILEFLNENSDFMKAVLSPKGDLSFQ 126 Query: 122 KRLRTLIHSRMYEKLPRQAFNPDALAVPDDYIVAYFSSAHFGVIRHWFESGRTLPPEQVA 181 +L+ + ++E N + L VP Y+ +Y +SAH GVI+ W SG+ PE++A Sbjct: 127 TKLKDFMWKTLFEDTNGALINKENLLVPSQYLTSYMASAHIGVIQQWLNSGQKETPEEIA 186 Query: 182 LILTRLVRDGPLLTA 196 IL+ + GP A Sbjct: 187 RILSTIAVHGPFYAA 201 >ref|NP_832829.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP10030.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 205 Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 4/195 (2%) Query: 6 DLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLMEKMEDQ 65 DLRV+RTK I A + L+EEKG + + V+ +T+KA INRGTFY HYQD +DLM K ++ Sbjct: 7 DLRVVRTKTAIRNALVELIEEKGFDAITVKDITTKANINRGTFYAHYQDKFDLMTKCQED 66 Query: 66 IIEEMNALPARTIPEQL--LGSG-SVEEPFPSIVEFIRFMNGRHRFFAIFFAQEGT-SFG 121 I+ E +++ + PE + LGS S PF I + F+N F + +G SF Sbjct: 67 IMYEFSSIAKQKFPEVIADLGSNPSPTMPFILITSILEFLNENSDFMRAVLSPKGDLSFQ 126 Query: 122 KRLRTLIHSRMYEKLPRQAFNPDALAVPDDYIVAYFSSAHFGVIRHWFESGRTLPPEQVA 181 +L+ + ++E N + L VP +Y+ +Y +SAH GVI+ W +G+ PE++A Sbjct: 127 TKLKDFMWKTLFEDTNGPLINKENLLVPSEYLTSYMASAHIGVIQQWLNNGQKETPEEIA 186 Query: 182 LILTRLVRDGPLLTA 196 L+ + GP A Sbjct: 187 RFLSTIAVHGPFYAA 201 >ref|ZP_00103623.1| COG1309: Transcriptional regulator [Desulfitobacterium hafniense] Length = 201 Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 109/197 (55%), Gaps = 1/197 (0%) Query: 1 MEKAADLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLME 60 M D R+IRTK+ I A ++L+E KG ++V+ +T+KA INRGTFYLHY+D +DL++ Sbjct: 1 MNSTEDRRIIRTKEAIRAALVTLIEAKGFAALSVKDITTKANINRGTFYLHYKDKFDLLD 60 Query: 61 KMEDQIIEEMNALPARTIPEQLLGSGSVEEPFPSIVEFIRFMNGRHRFFAIFFAQEGT-S 119 + +++I+++ + + P IV ++++ A +G + Sbjct: 61 QTLEEVIKDIEGIILKITALSTADFADTRIPTAIIVRLFQYVDDNAALMQAIMATKGNYA 120 Query: 120 FGKRLRTLIHSRMYEKLPRQAFNPDALAVPDDYIVAYFSSAHFGVIRHWFESGRTLPPEQ 179 +++ L+ S ++EK + + VP +Y+ +Y +SAHFGVI+ W + GR PE+ Sbjct: 121 LQSKMKKLMWSNIFEKNCISLVKREKMLVPGEYLASYIASAHFGVIQEWLDRGRQESPEE 180 Query: 180 VALILTRLVRDGPLLTA 196 +A IL + GPL A Sbjct: 181 MARILVNITFHGPLFAA 197 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 302,663,171 Number of extensions: 12442564 Number of successful extensions: 30331 Number of sequences better than 1.0e-05: 63 Number of HSP's gapped: 30309 Number of HSP's successfully gapped: 63 Length of query: 206 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 86 Effective length of database: 431,425,698 Effective search space: 37102610028 Effective search space used: 37102610028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)