BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0003.p (162 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00061101.1| COG1846: Transcriptional regulators [Clostrid... 79 3e-14 ref|NP_472202.1| similar to transcription regulators [Listeria i... 75 4e-13 ref|NP_466248.1| similar to transcription regulators [Listeria m... 71 8e-12 ref|NP_633887.1| transcriptional regulator, MarR family [Methano... 71 1e-11 ref|NP_615153.1| transcriptional regulator, MarR family [Methano... 70 2e-11 >ref|ZP_00061101.1| COG1846: Transcriptional regulators [Clostridium thermocellum ATCC 27405] Length = 154 Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 79/131 (60%) Query: 5 TLARNVGILHRQTQTYIAAIGSALDISFSECILLMNIYGNEGITQEELSALLFIDKAATA 64 ++ R + +L R++Q Y+ + S +++ +E M + EGITQEEL++++ +DKAATA Sbjct: 6 SIGRLINLLARKSQMYLGKVLSQYNLTAAEEPFFMALQNREGITQEELTSIVCVDKAATA 65 Query: 65 RSLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAWEKVTTGGMDEEAKD 124 R+++SLE+KG + R +D+R +++ T+K + L + K+ T + EE D Sbjct: 66 RAVRSLEEKGYLLRIQDEKDKRQNRVYPTEKAKQIGQEVRTELMKFNKLLTRNIKEEDLD 125 Query: 125 QVFKGLQRMAE 135 +++ L +M E Sbjct: 126 RLYSLLLQMEE 136 >ref|NP_472202.1| similar to transcription regulators [Listeria innocua] pir||AD1791 transcription regulators homolog lin2874 [imported] - Listeria innocua (strain Clip11262) emb|CAC98100.1| lin2874 [Listeria innocua] Length = 149 Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 71/136 (52%) Query: 5 TLARNVGILHRQTQTYIAAIGSALDISFSECILLMNIYGNEGITQEELSALLFIDKAATA 64 +LA+ + I+HR T+ ++ + L +Y +GI+QE ++ +DKA+ Sbjct: 7 SLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLYKEDGISQESMAKRFMVDKASVT 66 Query: 65 RSLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAWEKVTTGGMDEEAKD 124 R ++ LE G+IRRE DRR +++FVT+ G + + W + T G EE KD Sbjct: 67 RHIKRLEDLGMIRREMDTRDRRIQRIFVTETGFKMRELIEEVTAEWSALLTAGFSEEEKD 126 Query: 125 QVFKGLQRMAEQSMRA 140 + + R+++ ++ A Sbjct: 127 DLMHLIGRLSDNAIMA 142 >ref|NP_466248.1| similar to transcription regulators [Listeria monocytogenes EGD-e] pir||AE1415 transcription regulators homolog lmo2726 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00939.1| lmo2726 [Listeria monocytogenes] Length = 149 Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 72/136 (52%) Query: 5 TLARNVGILHRQTQTYIAAIGSALDISFSECILLMNIYGNEGITQEELSALLFIDKAATA 64 +LA+ + I+HR T+ ++ + L +Y +GI+QE ++ +DKA+ Sbjct: 7 SLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLYKEDGISQESMAKRFMVDKASVT 66 Query: 65 RSLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAWEKVTTGGMDEEAKD 124 R ++ LE+ G+IRRE +DRR +++FVT+ G + + W + T E+ KD Sbjct: 67 RHIKRLEELGMIRREIDAKDRRIQRIFVTETGFQMRDLIEEVTAEWSALLTANFSEKEKD 126 Query: 125 QVFKGLQRMAEQSMRA 140 + + R+++ ++ A Sbjct: 127 DLMHLIGRLSDNAIIA 142 >ref|NP_633887.1| transcriptional regulator, MarR family [Methanosarcina mazei Goe1] gb|AAM31559.1| transcriptional regulator, MarR family [Methanosarcina mazei Goe1] Length = 156 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 67/134 (50%) Query: 6 LARNVGILHRQTQTYIAAIGSALDISFSECILLMNIYGNEGITQEELSALLFIDKAATAR 65 + + + L+R Q YI I + LM +Y +GI QE LS L IDK TAR Sbjct: 21 IGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTAR 80 Query: 66 SLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAWEKVTTGGMDEEAKDQ 125 ++Q L +G + R+ +DRR+ ++F+T+KG + + W ++ D+ + + Sbjct: 81 AIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKIASEWGEILFSSFDDRQRRE 140 Query: 126 VFKGLQRMAEQSMR 139 + L+ M E ++ Sbjct: 141 ITNSLEIMFENGLK 154 >ref|NP_615153.1| transcriptional regulator, MarR family [Methanosarcina acetivorans str. C2A] gb|AAM03633.1| transcriptional regulator, MarR family [Methanosarcina acetivorans str. C2A] Length = 156 Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 66/134 (49%) Query: 6 LARNVGILHRQTQTYIAAIGSALDISFSECILLMNIYGNEGITQEELSALLFIDKAATAR 65 + + + L+R Q YI I + LM +Y +G+ QE LS L IDK T R Sbjct: 21 IGKAISYLYRYEQVYIGKKIEPYGIGSGQFPFLMRLYREDGVNQESLSDYLKIDKGTTTR 80 Query: 66 SLQSLEKKGVIRRETKNEDRRAKKLFVTDKGTEFQAYFFNRLEAWEKVTTGGMDEEAKDQ 125 ++Q L +G + R+ +DRR+ ++F+++K + + WE + G D+ + + Sbjct: 81 AIQKLADEGYVFRQRDEKDRRSYRIFLSEKAKKLEPDMKKIALEWEDILFSGFDDSQRKE 140 Query: 126 VFKGLQRMAEQSMR 139 + L+ M E ++ Sbjct: 141 ITNSLEIMFENVLK 154 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.130 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 211,577,045 Number of extensions: 7529463 Number of successful extensions: 21309 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 21336 Number of HSP's successfully gapped: 40 Length of query: 162 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 46 Effective length of database: 442,286,094 Effective search space: 20345160324 Effective search space used: 20345160324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)