BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0568.0002.p (676 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349280.1| NAD-dependent DNA ligase [Clostridium acetobuty... 629 e-179 ref|NP_782928.1| NAD-dependent DNA ligase [Clostridium tetani E8... 620 e-176 ref|NP_563175.1| DNA ligase [Clostridium perfringens] >gi|181459... 614 e-174 ref|NP_347827.1| DNA ligase (NAD dependent), LigA [Clostridium a... 536 e-150 sp|O87703|DNLJ_BACST DNA ligase (Polydeoxyribonucleotide synthas... 441 e-122 >ref|NP_349280.1| NAD-dependent DNA ligase [Clostridium acetobutylicum] pir||A97229 NAD-dependent DNA ligase [imported] - Clostridium acetobutylicum gb|AAK80620.1| NAD-dependent DNA ligase [Clostridium acetobutylicum] Length = 669 Score = 629 bits (1623), Expect = e-179, Method: Compositional matrix adjust. Identities = 329/654 (50%), Positives = 435/654 (66%), Gaps = 11/654 (1%) Query: 13 IEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQRVGGELLK 72 ++EL+ ELN+Y+Y YY LD P V+DKEYD YD+LV LE ++GI P+SPT RVG +LK Sbjct: 11 MQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEKTGITYPYSPTNRVGDVILK 70 Query: 73 GFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYAVELKFDGL 132 F + H + LWSLDKAQ+ E++ WH R K V +YNS N E+ LPE Y + KFDGL Sbjct: 71 QFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNS-NHEDKLPELKYVLTKKFDGL 129 Query: 133 TLNLTYRD-GTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEG-VIEVQGEGIMNLS 190 T+N TY + G +++AATRG GV GE I +Q KTIKS+PL I K G V+EV GE IM + Sbjct: 130 TINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIPLKI--KNGSVVEVHGEAIMTKT 187 Query: 191 VLADYNTRAAEPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFSDHQEMMD 250 +YN +A PLK + TA R L+AFFY++GY EG F + EMM+ Sbjct: 188 AFNEYNKKAEVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGYNEGKAFKSYMEMMN 247 Query: 251 FLRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREVLGYTD 310 F++ F V+ YL + +++ +++ + + RS LDY IDG VI + D+R RE LGYT Sbjct: 248 FIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGVVIVIDDYRTREYLGYTV 307 Query: 311 KFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNNVGDI 370 KFP+WA+AYKFEAEE TT L V WNVGR+G+V+P A +E VELAGV V+ TLNN+ DI Sbjct: 308 KFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVIVKRATLNNMDDI 367 Query: 371 ERKNLKHALGTRVFIRRSNDVIPEILG-KVTEESDGGEIIFPVDCPACGFPLEMRGAHLF 429 RK +K +G+RVF+RRSNDVIPEI+G E + EI P CP CG + G HLF Sbjct: 368 GRKKVK--IGSRVFVRRSNDVIPEIMGVTEETEGETNEIEAPTICPYCGSEIVKEGVHLF 425 Query: 430 CNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFEQLVKL 489 C N L+CKPQ++ I HFASR+AM+IE FS+KTA QL+E+L ++ +DLY +T E+L+ L Sbjct: 426 CENTLSCKPQMVKSIVHFASREAMNIEGFSEKTAEQLFEKLNIKSISDLYRITKEELMSL 485 Query: 490 ERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMKATAEE 549 ++F +KKA+NL+ A+E+SK DLASF+Y+LGIPN GK T L ++S E + KA+ +E Sbjct: 486 DKFKDKKASNLINAIEKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKKASYDE 545 Query: 550 LSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFFSGKTVVL 609 L + DIG IVAESIV FF + S+N + ELGV P ++ F+GKTVV Sbjct: 546 LILVQDIGSIVAESIVEFFKQEKIEKSLNELFELGV---TPFYEESEVVENAFTGKTVVA 602 Query: 610 TGSLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQV 663 TG+LQ + V+GSVSKKTD VIAGE AGSK KA QLG+++ Sbjct: 603 TGTLQNYSRTAIKEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKI 656 >ref|NP_782928.1| NAD-dependent DNA ligase [Clostridium tetani E88] gb|AAO36865.1| NAD-dependent DNA ligase [Clostridium tetani E88] Length = 668 Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust. Identities = 327/654 (50%), Positives = 426/654 (65%), Gaps = 10/654 (1%) Query: 13 IEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQRVGGELLK 72 I EL+ ELN+Y Y YY LD P VSDKEYD YD+LV LE E+G +L +SPTQRVG +L Sbjct: 11 IHELIEELNKYAYEYYVLDNPTVSDKEYDKRYDELVNLEKETGFVLSYSPTQRVGDTVLT 70 Query: 73 GFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYAVELKFDGL 132 F + H + LWSLDKAQNIEQL+ W R K++ +YN N E LP P Y + KFDGL Sbjct: 71 QFDKYTHKSRLWSLDKAQNIEQLKEWINRNEKIIMEYNRLNEE-TLPMPTYILTKKFDGL 129 Query: 133 TLNLTYRD-GTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGVIEVQGEGIMNLSV 191 T+N TY + G LV+ ATRG G+ GE I +QVKTIK +PL I +IEV+GE IM Sbjct: 130 TVNCTYDESGILVKGATRGTGIIGEDITSQVKTIKCLPLRIA-NNNLIEVRGEAIMTKEA 188 Query: 192 LADYNTRAAEPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFSDHQEMMDF 251 YN +A PLK + TA+R L+AFFY+IGY+EG +F + EM+ F Sbjct: 189 FDKYNEKAEIPLKNLRNGAAGALRNLDVRETAKRNLSAFFYDIGYSEGNEFKTYMEMIGF 248 Query: 252 LRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREVLGYTDK 311 L + F V+PY+ ++ +++ IE+ R+ L+Y IDG VI + + REVLGYT K Sbjct: 249 LISMGFPVDPYIKECKDIVEIKDEIKYIEDIRNELNYDIDGIVIAINHIKTREVLGYTVK 308 Query: 312 FPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNNVGDIE 371 FPRWA+AYKFEAEE TT L V WNVGR+G+VTP A +E+VEL G T++ TLNN+ DI Sbjct: 309 FPRWAIAYKFEAEEATTKLIDVEWNVGRSGRVTPTALLESVELGGATIKRATLNNMDDII 368 Query: 372 RKNLKHALGTRVFIRRSNDVIPEILGKVTEES--DGGEIIFPVDCPACGFPLEMRGAHLF 429 RK ++ LG VFIRRSNDVIPEI+G V E S + EI P+ CP C L G HLF Sbjct: 369 RKKVR--LGAEVFIRRSNDVIPEIMG-VVESSLENTEEIKAPLKCPYCESKLINEGVHLF 425 Query: 430 CNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFEQLVKL 489 C N L+CKPQ++ + HFASR+AM+IE FS+KTA Q YEEL ++ DLY + E L+ L Sbjct: 426 CENTLSCKPQLVKSLVHFASREAMNIEGFSEKTAEQFYEELNIKSIGDLYRVKKEDLLTL 485 Query: 490 ERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMKATAEE 549 ++F EKKA N++ A+E SK L+SF+YAL IPN G T R L +++L+ + AT EE Sbjct: 486 DKFKEKKADNIMNAIENSKKPKLSSFIYALSIPNVGVKTARDLVKSFKTLDNIKNATIEE 545 Query: 550 LSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFFSGKTVVL 609 L+ + DIG IVA S++ FF + SI +LELGV ++ D+ F+GKT+V+ Sbjct: 546 LTSVKDIGEIVANSVIEFFKQENINESIKELLELGVTPIMD--ITEIKKDNKFNGKTIVV 603 Query: 610 TGSLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQV 663 TG+L+ T KVSGSVSKKTD V+AGE+AGSK KA +LGI++ Sbjct: 604 TGTLEGYTRNEIKEKLEALGAKVSGSVSKKTDFVLAGEEAGSKYNKAMELGIRI 657 >ref|NP_563175.1| DNA ligase [Clostridium perfringens] dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13] Length = 665 Score = 614 bits (1584), Expect = e-174, Method: Compositional matrix adjust. Identities = 324/661 (49%), Positives = 427/661 (64%), Gaps = 9/661 (1%) Query: 5 SRMDVMHTIEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQ 64 S+MD IEELV ELN+Y Y YY L V+DK+YD Y +LV LE E+G LP+SPTQ Sbjct: 2 SKMDKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKETGYKLPYSPTQ 61 Query: 65 RVGGELLKGFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYA 124 RVG +L F + H A LWSLDKAQ +E++R WH R +K + +YN + E LP Y Sbjct: 62 RVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEE-LPPLKYI 120 Query: 125 VELKFDGLTLNLTY-RDGTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGVIEVQG 183 + KFDGLT+NL+Y +G LV ATRG G GE + AQVKTIKS+PL I + +E+ G Sbjct: 121 LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIPLKIDCHD-FLEIHG 179 Query: 184 EGIMNLSVLADYNTRAAEPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFS 243 E IM YN+ A PLK TA+R L+AFFY++GY EG F Sbjct: 180 EAIMTTEAFEKYNSEAETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKEGAPFK 239 Query: 244 DHQEMMDFLRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIR 303 + EM++F++T F ++ Y+ D++ +++ I + R L+Y IDG VI + D R R Sbjct: 240 TYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAIDDIRTR 299 Query: 304 EVLGYTDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCT 363 ++LGYT KFP+WA+AYKFEA+E TT L V WNVGR+G+V+P A +E VELAGVTV+ T Sbjct: 300 DLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVTVKRAT 359 Query: 364 LNNVGDIERKNLKHALGTRVFIRRSNDVIPEILGKVTEESDG-GEIIFPVDCPACGFPLE 422 LNN+ DI RK ++ LG VF+RRSNDVIPEI+G V E +G EI P CPACG L Sbjct: 360 LNNMDDIARKGVR--LGAEVFVRRSNDVIPEIMGVVPESLEGTKEIEEPKVCPACGAHLV 417 Query: 423 MRGAHLFCNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELT 482 G H++C N L CKPQ++ I HFA R+AM+I FS+KTA QL+E+L +R+ +DLY+L Sbjct: 418 HEGVHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFSEKTAEQLFEKLDIRDISDLYKLE 477 Query: 483 FEQLVKLERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGV 542 +E+L+ L++FG KKA NLL A+E+SK L +FLY+LGIPN G T + L + SLE + Sbjct: 478 YEKLLDLDKFGPKKAQNLLDAIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENL 537 Query: 543 MKATAEELSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFF 602 KAT EEL + D+G IVA SI+ FF + + IN +L LGV P ++ +S F Sbjct: 538 EKATFEELVSVQDVGDIVARSIIEFFKEERTLKVINELLSLGVN---PHYEKKEVLESPF 594 Query: 603 SGKTVVLTGSLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQ 662 GKTVV+TG+L+ + KVSGSVSKKTD VIAGE AGSK KA+ LG+ Sbjct: 595 MGKTVVVTGTLENYSRTSIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVT 654 Query: 663 V 663 + Sbjct: 655 I 655 >ref|NP_347827.1| DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum] pir||D97047 DNA ligase (NAD dependent), LigA [imported] - Clostridium acetobutylicum gb|AAK79167.1| DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum] Length = 663 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 296/658 (44%), Positives = 408/658 (62%), Gaps = 13/658 (1%) Query: 10 MHTIEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQRVGGE 69 M IE+L+ +LN+Y+Y YY LD P V+DKEYD++YD+L LE E+ I P+SPTQRVG Sbjct: 1 MKLIEDLIEKLNKYSYSYYVLDNPIVADKEYDIMYDELKRLEEETEYINPNSPTQRVGDI 60 Query: 70 LLKGFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYAVELKF 129 +L F H LWSLDKAQ ++++++ + +K V YN + E LP P + V K Sbjct: 61 ILDKFEKTHHKNKLWSLDKAQKKDEVKAFVNKCVKFVEQYNLTHSE-KLPSPQFVVTQKL 119 Query: 130 DGLTLNLTYRDGTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGVIEVQGEGIMNL 189 DGLT+N +Y + L+++ATRG G GE I Q KTI ++P I + G I+V GE +M Sbjct: 120 DGLTINCSYNESRLIKSATRGTGEIGEDITEQSKTILNLPNAINY-SGEIDVHGEALMTK 178 Query: 190 SVLADYNTRAA---EPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFSDHQ 246 + L YN+ PLK K TA R+L A FY++ Y + + + Sbjct: 179 NALEQYNSNLKVNETPLKNLRNGAAGALRNLNIKETARRKLVAQFYDLSYTDK-KLKKYS 237 Query: 247 EMMDFLRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREVL 306 E++ FL++ F + Y + FD++ + + I E RS L Y IDG VI++ D ++ Sbjct: 238 EILLFLKSQGFNITEY-NICNNFDEINQAIDNIGEVRSSLQYDIDGVVIRLNDIETSRLM 296 Query: 307 GYTDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN 366 GYT K P++A+AYKF+A+ETTT L V WNVGR+G++ P A +E VELAGV V+ TLNN Sbjct: 297 GYTIKCPKYAIAYKFKAKETTTKLIDVEWNVGRSGRINPTAILEPVELAGVIVKRATLNN 356 Query: 367 VGDIERKNLKHALGTRVFIRRSNDVIPEILG-KVTEESDGGEIIFPVDCPACGFPLEMRG 425 + + K K G RVF+RRSNDVIPEI+G E + EI P CP CG + G Sbjct: 357 MD--DIKRKKIKKGARVFLRRSNDVIPEIMGVTEETEGETKEIEAPTICPYCGSEIVKEG 414 Query: 426 AHLFCNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFEQ 485 HLFC N L+CKPQ++ I HFASR AM+IE FS+KTA QL+E+L ++ +DLY +T E+ Sbjct: 415 VHLFCENTLSCKPQMVKSIVHFASRKAMNIEGFSEKTAEQLFEKLNIKSISDLYRITKEE 474 Query: 486 LVKLERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMKA 545 L+ L++F +KKA+NL+ A+E+SK DL SF+Y+LGIPN GK T L ++S E + KA Sbjct: 475 LMSLDKFKDKKASNLINAIEKSKECDLDSFVYSLGIPNVGKKTATDLCKQFKSFENIKKA 534 Query: 546 TAEELSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFFSGK 605 + EL + DIG IVA+SIV FF + S+N + +LGV+ P ++S F+ K Sbjct: 535 SYFELILVQDIGSIVAKSIVDFFKQEKIEKSLNELFKLGVK---PSYEESEVSESVFNDK 591 Query: 606 TVVLTGSLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQV 663 TVV TGSLQ + KV+GSVSKKTD VIAGE AGSK KA LG+++ Sbjct: 592 TVVATGSLQNYSRTEIKEKLESLGAKVAGSVSKKTDYVIAGENAGSKYDKAVALGVKI 649 >sp|O87703|DNLJ_BACST DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus] Length = 670 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 278/661 (42%), Positives = 365/661 (55%), Gaps = 29/661 (4%) Query: 15 ELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAE-SGIILPHSPTQRVGGELLKG 73 EL LN+Y Y YY LD P V D EYD L +L+A+E + + SPTQR+GG L+ Sbjct: 12 ELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGGPPLEA 71 Query: 74 FTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYAVELKFDGLT 133 F H P+ SL A LR + RV + V E Y ELK DGL Sbjct: 72 FRKVAHRVPMMSLANAFGEGDLRDFDRRVRQEVG------------EAAYVCELKIDGLA 119 Query: 134 LNLTYRDGTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGV-IEVQGEGIMN---- 188 +++ Y DG VQ ATRG+G TGE I +KTI+S+PL + KE V +E +GE M Sbjct: 120 VSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRL--KEPVSLEARGEAFMPKASF 177 Query: 189 LSVLADYNTRAAEPLKXXXXXXXXXXXXXXPKTTAERRLNAFFYNIGYAEGVQFSDHQEM 248 L + + R E PK A R+L+ F Y + AE + + H E Sbjct: 178 LRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIASHSEA 237 Query: 249 MDFLRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREVLGY 308 +D+L+ FKVNP D+V ++E + R L Y IDG VIKV F + LG Sbjct: 238 LDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGA 297 Query: 309 TDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNNVG 368 T K PRWA+AYKF AEE T L + NVGRTG VTP A +E V +AG TVQ TL+N Sbjct: 298 TAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNED 357 Query: 369 DIERKNLKHALGTRVFIRRSNDVIPEILGKVTEESDGGEIIF--PVDCPACGFPL-EMRG 425 I K+++ +G V I+++ D+IPE++G V + DG E F P CP C L + G Sbjct: 358 FIREKDIR--IGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAMPTHCPECESELVRLEG 415 Query: 426 -AHLFCNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFE 484 L C N NC Q+ R+ HFASR AM+IE +K QL+ VR+ ADLY LT E Sbjct: 416 EVALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVRDVADLYCLTKE 474 Query: 485 QLVKLERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMK 544 QLV LER GEK AANLL A+E SK L L+ LGI G ++LA+H+ ++E + + Sbjct: 475 QLVGLERMGEKSAANLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLER 534 Query: 545 ATAEELSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEA--KAPEAPRQVSTDSFF 602 AT EEL +P+IG +A++I +FFA P + + GV K P+ + DS F Sbjct: 535 ATKEELMAVPEIGEKMADAITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAF 594 Query: 603 SGKTVVLTGSLQKLTXXXXXXXXXXXXXKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQ 662 +GKTVVLTG L ++ +V+GSVS+ TDLVIAGE AGSKL KAQQLGI+ Sbjct: 595 AGKTVVLTGKLASMSRNEAKEQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIE 654 Query: 663 V 663 + Sbjct: 655 I 655 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 906,295,268 Number of extensions: 37073575 Number of successful extensions: 112702 Number of sequences better than 1.0e-05: 978 Number of HSP's gapped: 109904 Number of HSP's successfully gapped: 1014 Length of query: 676 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 544 Effective length of database: 398,844,510 Effective search space: 216971413440 Effective search space used: 216971413440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)