BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0054.p (162 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183018.1| hypothetical protein Exigu164901 [Exiguobacte... 89 4e-17 ref|NP_241184.1| BH0318~unknown [Bacillus halodurans] >gi|254892... 72 6e-12 ref|NP_242480.1| BH1614~unknown conserved protein in B. subtilis... 67 1e-10 ref|NP_979176.1| conserved domain protein [Bacillus cereus ATCC ... 65 6e-10 >ref|ZP_00183018.1| hypothetical protein Exigu164901 [Exiguobacterium sp. 255-15] Length = 151 Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 5/150 (3%) Query: 12 EFQSLIPYIQSLATLEDADWETPVAAGKWTLKEMLCHITQWDKYFYEEAFAKIQNGQPLT 71 E Q I Y +SL L +WE P+A KWT++E + H+ WD+Y+ + A +K+ + + LT Sbjct: 7 ELQFAIDYYKSLERLSGEEWELPLAVDKWTVQECVSHLFLWDRYYLDHAVSKLPD-ERLT 65 Query: 72 SRHQNFDEFNARAIEYAKSLTTQAAIGQFVLYRTKILESTAGLSDEEFTKIYLDGDGKKF 131 ++DEFN A+EYA + A + + + R +++ L+DE++ + Y F Sbjct: 66 LVQTDYDEFNRLAVEYAHHIDALALLKKAIGVRRELVTLLDRLTDEQYERTY----EGTF 121 Query: 132 SIRGYLRDFIPHDKHHKRQMEQYLKTMRSS 161 + ++ FI HD HH+ Q++ L ++ + Sbjct: 122 QPKVFVESFIAHDHHHQDQIDAALARLKRN 151 >ref|NP_241184.1| BH0318~unknown [Bacillus halodurans] pir||F83689 hypothetical protein BH0318 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04037.1| BH0318~unknown [Bacillus halodurans] Length = 151 Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 76/142 (53%), Gaps = 3/142 (2%) Query: 12 EFQSLIPYIQSLATLEDADWETPVAAGKWTLKEMLCHITQWDKYFYEEAFAKIQNGQPLT 71 +F+ I I +L ++D P++ GKW+++E++ H+ WDK+ E+ + G L Sbjct: 7 QFEKNIDEILALKEIDDTVLCEPLSEGKWSIREIVGHLYYWDKFILEKMVPLMGEGGNLP 66 Query: 72 SRHQNFDEFNARAIEYAKSLTTQAAIGQFVLYRTKILESTAGLSDEEFTKIYLDGDGKKF 131 ++ D+ N AI + K + ++ I FV R ++ L+++ + + G ++F Sbjct: 67 GFPEH-DQHNEDAILFLKEYSVESIIDHFVATRKELTREMKNLAED--IRFTIGGGKRQF 123 Query: 132 SIRGYLRDFIPHDKHHKRQMEQ 153 S +L+ F+ HD HH +QM++ Sbjct: 124 SGESFLKIFLKHDAHHIKQMKE 145 >ref|NP_242480.1| BH1614~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||F83851 hypothetical protein BH1614 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05333.1| BH1614~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 312 Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 8 QLVFEFQSLIPYIQSLATLEDADWETPVAAGKWTLKEMLCHITQWDKYFYEEAFAKIQNG 67 L+ + ++ +++ L + W TP+ G W+ E++ H +WD + F G Sbjct: 6 HLIAKLENHAEWVKRLVLVGQKSWHTPLQKGGWSPAEVIHHFHRWDDFARNYRFIPFLAG 65 Query: 68 QP--LTSRHQNFDEFNARAIEYAKSLTTQAAIGQFVLYRTKILESTAGLSDEEFTKIYLD 125 + H F+E + R E L +A I Q + R ++E+ L +E + + Sbjct: 66 RATFTAGAHAKFNEHSER--EVRDGLGKEAIIVQCLKSRYALIETVEKLREEAWEQTLTI 123 Query: 126 GDGKKFSIRGYLRDFIPHDKHHKRQMEQYLKTMRSSK 162 GD SI YL+ I HD+HH+ Q+EQ+ + K Sbjct: 124 GD-HDLSIHTYLQGVIEHDRHHREQIEQFFSLEQQGK 159 >ref|NP_979176.1| conserved domain protein [Bacillus cereus ATCC 10987] gb|AAS41784.1| conserved domain protein [Bacillus cereus ATCC 10987] Length = 162 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%) Query: 7 EQLVFEFQSLIPYIQSLATLEDADWETPVAAGKWTLKEMLCHITQWDKYFYEEAFAKIQN 66 E ++ E +LI + Q+L L D W G W + +++ H WD + + + Sbjct: 4 ENILEEKLNLIEWCQTLKGLSDDMWLRSFKNGSWGIADVISHFIVWDTFLIKHRIPYFIS 63 Query: 67 GQPLTSRHQNFDEFNARAIEYAKS-LTTQAAIGQFVLYRTKILESTAGLSDEEFTKIYLD 125 GQ + + + +E N AI+YA+S ++ + + QF + R K+++ + + F + Sbjct: 64 GQSVPNVPIDVEEMNKGAIKYARSGISKEEILDQFSVTRKKLVDQIERIPTQYFYNDHQF 123 Query: 126 GDGKKFSIRGYLRDFIPHDKHHKRQMEQYL 155 G KK + Y I HD HK +++Q+L Sbjct: 124 G-TKKVRLNHYFSSLIQHDLKHKEEIKQFL 152 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 232,836,200 Number of extensions: 8956019 Number of successful extensions: 19735 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 19731 Number of HSP's successfully gapped: 4 Length of query: 162 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 46 Effective length of database: 442,286,094 Effective search space: 20345160324 Effective search space used: 20345160324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 121 (51.2 bits)