BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0049.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349237.1| Uncharaterized conserved protein, YOME B.subtil... 100 5e-20 ref|NP_781452.1| conserved protein [Clostridium tetani E88] >gi|... 93 1e-17 ref|NP_349240.1| Uncharaterized conserved protein, YOME B.subtil... 92 1e-17 ref|NP_046580.1| unknown [Bacteriophage SPBc2] >gi|16079198|ref|... 88 2e-16 gb|EAK42150.1| unknown [environmental sequence] 87 6e-16 >ref|NP_349237.1| Uncharaterized conserved protein, YOME B.subtilis ortholog [Clostridium acetobutylicum] pir||F97223 uncharaterized conserved protein, YOME B. subtilis ortholog CAC2630 [imported] - Clostridium acetobutylicum gb|AAK80577.1| Uncharaterized conserved protein, YOME B.subtilis ortholog [Clostridium acetobutylicum] Length = 347 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 117/246 (47%), Gaps = 46/246 (18%) Query: 100 FVADV-VLKDKNSLRAAFADNSFGTNITEDTSEIASSNNAIFAINGDYY----------- 147 F A+V ++KD N ++ +A G + E T E+A A+ AING Y+ Sbjct: 119 FTANVLIIKDPNRVKIGYAAQ-IGY-VGETTREMAKRYKAVAAINGGYFKDTSPNKQSGG 176 Query: 148 -GFRNDGVIIRNGTL-YRDD----------PVRDAMALFKDGTMQ---TYSEEEVSSSDL 192 G G I+ NG + Y D A+ + KDG +Q TYS ++ L Sbjct: 177 VGAIPTGFIMSNGQIVYPQDNSNWSEITSEEENRALTIDKDGNLQVGGTYSPDQ-----L 231 Query: 193 LAQGAANTLSFGPILIQDGKIASDFSNVKIDTNFGNRSIQNANPRTAVGMIAPNHYVFVV 252 + G + P LI++GK S+ NPRTA+G A +F+V Sbjct: 232 IKSGIREAVITEPYLIKNGK-----------NTIQANSVSGTNPRTAIGQRADKSIIFMV 280 Query: 253 VDGRSEGYSRGMTLTELANVMSDLGATEAYNLDGGGSSTMYFMGRVVNNPQGKNQERGVS 312 +DGR +G G T+ ++ +M LGA A LDGGGS+ MY+ G ++NNP ER V Sbjct: 281 IDGR-QGVKLGATVGDVQVLMHKLGAVNAACLDGGGSTAMYYNGEIINNPSNATGERAVP 339 Query: 313 DILYIK 318 DI+Y++ Sbjct: 340 DIIYVE 345 >ref|NP_781452.1| conserved protein [Clostridium tetani E88] gb|AAO35389.1| conserved protein [Clostridium tetani E88] Length = 335 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 103/212 (48%), Gaps = 35/212 (16%) Query: 127 EDTSEIASSNNAIFAINGDYYGFRND------------GVIIRNGTLYRDD-----PVRD 169 E TS+IA N AI AING + +ND G+++ NG L +D D Sbjct: 140 ELTSKIAKDNKAIAAINGGGFTDKNDDGNWTGTGGQPVGILMSNGELVHNDIKDLNKKED 199 Query: 170 AMALFKDGTMQT--YSEEEVSSSDLLAQGAANTLSFGPILIQDGKIASDFSNVKIDTNFG 227 MA+ G + YS E+ D+ ++FGP L+ +G+ N Sbjct: 200 VMAITSKGVLLVGKYSLNEMEDLDV-----KEAITFGPALVVNGQPTIKSGN-------- 246 Query: 228 NRSIQNANPRTAVGMIAPNHYVFVVVDGRSEGYSRGMTLTELANVMSDLGATEAYNLDGG 287 Q PRTA+G + +VVDGR + S G TL ++ ++M + GA A NLDGG Sbjct: 247 --GGQGPAPRTAIGQRKDGSILLLVVDGR-QFRSIGATLKDIQDIMLEYGAYNATNLDGG 303 Query: 288 GSSTMYFMGRVVNNPQGKNQERGVSDILYIKE 319 S+TMY+ G V+NNP ER + ++Y+++ Sbjct: 304 SSATMYYDGEVINNPCDPLGERSIPSVVYVEQ 335 >ref|NP_349240.1| Uncharaterized conserved protein, YOME B.subtilis ortholog [Clostridium acetobutylicum] pir||A97224 uncharaterized conserved protein, YOME B. subtilis ortholog CAC2633 [imported] - Clostridium acetobutylicum gb|AAK80580.1| Uncharaterized conserved protein, YOME B.subtilis ortholog [Clostridium acetobutylicum] Length = 354 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 106/216 (49%), Gaps = 36/216 (16%) Query: 127 EDTSEIASSNNAIFAINGDYYGFRND----------------GVIIRNG-TLYRDDPVRD 169 E TSEIA NNA+ A+NG GF+ + G+II +G +Y +P D Sbjct: 152 ETTSEIAKHNNALAAVNGG--GFQENSSGSKVVWTGTGALPTGIIISDGKVVYPKNP--D 207 Query: 170 AMALFKDGTMQTYSEEEV----SSSDLLAQGAANTLSFGPILIQDG--KIASDFSNVKID 223 +++ K T S V S +LL + ++FGP LI +G + F N ID Sbjct: 208 QLSIQKGTAAITKSGVLVVGDHSIRELLNENVVEAINFGPTLIVNGVDQTRDSFGN-SID 266 Query: 224 TNFGNRSIQNANPRTAVGMIAPNHYVFVVVDGRSEGYSRGMTLTELANVMSDLGATEAYN 283 + Q A PRTA+G + + VDGR +G G T+ ++ +M A A N Sbjct: 267 S-------QGAQPRTAIGQRKDGAILLLTVDGR-QGLQMGATIKDIQKIMEQENAYNAVN 318 Query: 284 LDGGGSSTMYFMGRVVNNPQGKNQERGVSDILYIKE 319 LDGG S+TMY+ G V+NNP K ER V+ + +K Sbjct: 319 LDGGASTTMYYNGHVINNPCDKFGERTVATTIIVKH 354 >ref|NP_046580.1| unknown [Bacteriophage SPBc2] ref|NP_390022.1| yomE [Bacillus subtilis] pir||T12792 hypothetical protein yomE - Bacillus subtilis phage SPBc2 emb|CAB14057.1| yomE [Bacillus subtilis subsp. subtilis str. 168] gb|AAC13001.1| unknown [Bacteriophage SPBc2] Length = 644 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 20/206 (9%) Query: 121 FGTNITEDTSEIASSNNAIFAINGDYYGFRNDGVI----IRNGTLYRDDPVR-----DAM 171 FGT E +A ++ AIN G+R++G + I++G LY+D +A Sbjct: 111 FGTTNRETVLSMAKRKRSVVAINAS--GWRSNGEVMGLQIKDGVLYKDYDAAGYTGAEAC 168 Query: 172 ALFKDGTMQTYSEEEVSSSDLLAQGAANTLSFGPILIQDGKIASDFSNVKIDTNFGNRSI 231 F DGTM+ Y EV + L+++GA N+ +FG L++D K + D N Sbjct: 169 VFFDDGTMKVYGNREVDADILISKGARNSFAFGIWLVKDSKPRTAQMTTWADLNV----- 223 Query: 232 QNANPRTAVGMIAPNHYVFVVVDGRSEGYSRGMTLTELANVMSDLGATEAYNLDGGGSST 291 +PR A+G + V + VDGRS S G+T ++ ++ G A+ LDGGGSS Sbjct: 224 --KHPRQAIGQRSDGTLVIITVDGRSL-RSSGITAYDMPSLFLSEGCINAFLLDGGGSSQ 280 Query: 292 MYFMGRVVNNPQGKNQERGVSDILYI 317 G+ +NN ER V D L I Sbjct: 281 TAVEGKYINNIS-DGIERAVVDTLTI 305 >gb|EAK42150.1| unknown [environmental sequence] Length = 196 Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 90/174 (51%), Gaps = 27/174 (15%) Query: 148 GFRNDG------VIIRNGTLYR-DDPVRDAMALFKDGTMQTYSEEEVSSSDLLAQGAANT 200 GF N+G V +N +L+ +PV + F D +++ E+ L A + Sbjct: 30 GFLNNGNIDIAWVTSKNDSLFHFPEPVEN----FPDNPNESFDFEKS-----LFWDANDA 80 Query: 201 LSFGPILIQDGKIASDFSNVKIDTN---FGNRSIQNANPRTAVGMIAPNHYVFVVVDGRS 257 + GP+LI DG I +I +N F SI N +PRTA G V VV+DGR Sbjct: 81 VHAGPVLIHDGDI-------RITSNEEVFFGSSIPNIHPRTAAGYRENGELVLVVIDGR- 132 Query: 258 EGYSRGMTLTELANVMSDLGATEAYNLDGGGSSTMYFMGRVVNNPQGKNQERGV 311 + SRG+ L ELA +M DL EA NLDGGGSS M G+++N P G + +R V Sbjct: 133 QVNSRGVDLMELAIIMKDLDCIEAINLDGGGSSAMVVDGKLLNRPSGTSSQREV 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 403,287,497 Number of extensions: 15759719 Number of successful extensions: 36226 Number of sequences better than 1.0e-05: 36 Number of HSP's gapped: 36206 Number of HSP's successfully gapped: 36 Length of query: 323 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 197 Effective length of database: 415,135,104 Effective search space: 81781615488 Effective search space used: 81781615488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)