BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0045.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_980953.1| bacitracin ABC transporter, ATP-binding protein... 344 1e-93 ref|NP_834244.1| Bacitracin transport ATP-binding protein bcrA [... 342 5e-93 ref|NP_658563.1| ABC_tran, ABC transporter [Bacillus anthracis A... 340 2e-92 ref|NP_241684.1| bacitracin ABC transporter (ATP-binding protein... 330 1e-89 sp|P42246|YCBN_BACSU Hypothetical ABC transporter ATP-binding pr... 319 3e-86 >ref|NP_980953.1| bacitracin ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS43561.1| bacitracin ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 307 Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 164/230 (71%), Positives = 196/230 (85%) Query: 1 MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60 MT IL+T LTK ++GKE +S VNM VK+GEIYGFLGPNGAGKTT+MKMITNL+KPT G Sbjct: 1 MTYILKTNQLTKVFKGKEVISSVNMHVKKGEIYGFLGPNGAGKTTIMKMITNLIKPTSGD 60 Query: 61 IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHGEYMGYYDARAMEEALELV 120 IE FG +TD SYE+LKRMG IIE P+FYDKLTA+ENL+LH EYMGYYD A++ AL LV Sbjct: 61 IEIFGEKLTDTSYEVLKRMGTIIEYPIFYDKLTAKENLELHCEYMGYYDKNAIDHALHLV 120 Query: 121 KLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLSR 180 KL+G+D K VK FSLGMKQRLGIARA+MTKPELLILDEPINGLDP+GIKE+R++F+ML + Sbjct: 121 KLQGIDNKKVKDFSLGMKQRLGIARAIMTKPELLILDEPINGLDPIGIKELRDLFKMLCK 180 Query: 181 EYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIEL 230 EYG+TLL+SSHILGE+E +ADTIGVI G L++EV+M I + T YIE+ Sbjct: 181 EYGITLLVSSHILGEMELMADTIGVIQNGKLIKEVSMQSINGKQTEYIEI 230 >ref|NP_834244.1| Bacitracin transport ATP-binding protein bcrA [Bacillus cereus ATCC 14579] gb|AAP11445.1| Bacitracin transport ATP-binding protein bcrA [Bacillus cereus ATCC 14579] Length = 307 Score = 342 bits (876), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 164/238 (68%), Positives = 199/238 (83%) Query: 1 MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60 MT IL+T LTK ++GKE +SGVNM VK+GEIYGFLGPNGAGKTT+MKMITNL+KPT G Sbjct: 1 MTYILKTNQLTKVFKGKEVISGVNMHVKKGEIYGFLGPNGAGKTTIMKMITNLIKPTSGE 60 Query: 61 IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHGEYMGYYDARAMEEALELV 120 IE FG +TD SYE+LKRMG IIE P+FYDKLTA+ENL+LH EYMGYYD ++ AL LV Sbjct: 61 IEIFGEKLTDTSYEVLKRMGTIIEYPIFYDKLTAKENLELHCEYMGYYDKNEIDHALHLV 120 Query: 121 KLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLSR 180 KL+G+D K VK FSLGMKQRLGIARA++TKPELLILDEPINGLDP+GIKE+R++F+ML + Sbjct: 121 KLQGIDNKKVKDFSLGMKQRLGIARAIVTKPELLILDEPINGLDPIGIKELRDLFKMLCK 180 Query: 181 EYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIELITGESGKA 238 EYG+TLL+SSHILGE+E +ADTIGVI G L++EV+M I + T YIE+ + +A Sbjct: 181 EYGITLLVSSHILGEMELMADTIGVIQNGKLIKEVSMKSINGKQTEYIEITVPDVKRA 238 >ref|NP_658563.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_846980.1| bacitracin ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP28466.1| bacitracin ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 307 Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 163/238 (68%), Positives = 198/238 (83%) Query: 1 MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60 MT IL+T LTK ++GKE +S VNM VK+GEIYGFLGPNGAGKTT+MKMITNL+KPT G Sbjct: 1 MTYILKTNQLTKVFKGKEVISSVNMHVKKGEIYGFLGPNGAGKTTIMKMITNLIKPTSGE 60 Query: 61 IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHGEYMGYYDARAMEEALELV 120 IE FG +TD SYE+LKRMG IIE P+FYDKLTA+ENL+LH EYMGYYD ++ AL LV Sbjct: 61 IEIFGEKLTDTSYEVLKRMGTIIEYPIFYDKLTAKENLELHCEYMGYYDKNEIDHALHLV 120 Query: 121 KLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLSR 180 KL+G+D K VK FSLGMKQRLGIARA++TKPELLILDEPINGLDP+GIKE+R++F+ML + Sbjct: 121 KLQGIDNKKVKDFSLGMKQRLGIARAIVTKPELLILDEPINGLDPIGIKELRDLFKMLCK 180 Query: 181 EYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIELITGESGKA 238 EYG+TLL+SSHILGE+E +ADTIGVI G L++EV+M I + T YIE+ + +A Sbjct: 181 EYGITLLVSSHILGEMELMADTIGVIQNGKLIKEVSMKSINGKQTEYIEITVPDVKRA 238 >ref|NP_241684.1| bacitracin ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||B83752 bacitracin ABC transporter (ATP-binding protein) BH0818 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04537.1| bacitracin ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 314 Score = 330 bits (847), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 157/238 (65%), Positives = 196/238 (82%) Query: 1 MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60 MT ++ T +LTK +QGKE +S +N+ V +GEIYGFLGPNGAGKTTVMKM+ N VKP+ G Sbjct: 1 MTKVITTRNLTKTFQGKEIISNLNLHVNKGEIYGFLGPNGAGKTTVMKMLMNFVKPSAGE 60 Query: 61 IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHGEYMGYYDARAMEEALELV 120 IE FG +T SYE+LKR+G +IE P+FY+KL+ARENL+LH EYMGYY A+EEALE+V Sbjct: 61 IELFGQRLTSQSYEMLKRIGSMIEFPIFYEKLSARENLELHCEYMGYYKPSAIEEALEMV 120 Query: 121 KLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLSR 180 KL+ K VK FSLGMKQRLGIARA+ TKPELLILDEPINGLDP+GIKE+R++F+ L Sbjct: 121 KLQLTGSKAVKDFSLGMKQRLGIARAICTKPELLILDEPINGLDPVGIKEIRQLFQTLCN 180 Query: 181 EYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIELITGESGKA 238 EYG+T+LISSHIL E+EQ+ADT+GVI G+L+ EVA+D IRS+ T YIEL+T ++ KA Sbjct: 181 EYGVTILISSHILSEIEQIADTVGVIRNGMLVAEVALDDIRSQQTEYIELLTYDARKA 238 >sp|P42246|YCBN_BACSU Hypothetical ABC transporter ATP-binding protein ycbN Length = 300 Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 154/239 (64%), Positives = 198/239 (82%), Gaps = 1/239 (0%) Query: 1 MTTILRTWDLTKEYQGKEAVSGVNMSVKQGEIYGFLGPNGAGKTTVMKMITNLVKPTEGF 60 MT I++T LTK YQGKE VS V+M +K+GEIYGFLGPNGAGKTT+MKM+T+LVKPT G Sbjct: 1 MTYIVQTNGLTKTYQGKEVVSNVSMHIKKGEIYGFLGPNGAGKTTIMKMLTSLVKPTSGE 60 Query: 61 IEFFGVSMTDHSYELLKRMGCIIENPVFYDKLTARENLQLHG-EYMGYYDARAMEEALEL 119 I G T SYE+L +G +IE P+FY+ LTA ENL+ EYMGY++ +A++E L++ Sbjct: 61 IIILGNKFTHTSYEVLGNIGSMIEYPIFYENLTAEENLERSACEYMGYHNKKAIQEVLDM 120 Query: 120 VKLKGVDKKPVKQFSLGMKQRLGIARAVMTKPELLILDEPINGLDPMGIKEMREVFRMLS 179 V LK +DKKPVK FSLGMKQRLGIARA++TKP+LLILDEP+NGLDP+GIK++R++F++LS Sbjct: 121 VNLKQIDKKPVKTFSLGMKQRLGIARAILTKPDLLILDEPVNGLDPLGIKKIRQLFQVLS 180 Query: 180 REYGMTLLISSHILGEVEQVADTIGVIFEGILLEEVAMDVIRSRNTPYIELITGESGKA 238 +EYGMTLLISSH+LGE+EQ+ADTIGVI +G LLEEV+M+ +R +NT YIEL+T +A Sbjct: 181 KEYGMTLLISSHLLGEIEQIADTIGVIRDGRLLEEVSMEDVRGQNTEYIELLTPNQTRA 239 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 347,046,050 Number of extensions: 13699242 Number of successful extensions: 105035 Number of sequences better than 1.0e-05: 19770 Number of HSP's gapped: 86774 Number of HSP's successfully gapped: 20916 Length of query: 248 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 126 Effective length of database: 425,995,500 Effective search space: 53675433000 Effective search space used: 53675433000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)