BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0019.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_390916.1| similar to ABC transporter (ATP-binding protein... 422 e-117 ref|NP_244781.1| ABC transporter (ATP-binding protein) [Bacillus... 414 e-115 ref|NP_691754.1| ABC transporter ATP-binding protein [Oceanobaci... 413 e-114 ref|NP_765955.1| vraD protein [Staphylococcus epidermidis ATCC 1... 314 1e-84 dbj|BAA75354.1| similar to B.subtilis ytsC gene(80%-identity) [B... 311 8e-84 >ref|NP_390916.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|O34697|BCEA_BACSU Bacitracin export ATP-binding protein bceA pir||A70001 ABC transporter (ATP-binding protein) homolog ytsC - Bacillus subtilis gb|AAC00255.1| transporter [Bacillus subtilis] emb|CAB15016.1| ytsC [Bacillus subtilis subsp. subtilis str. 168] Length = 253 Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/250 (80%), Positives = 225/250 (90%) Query: 1 MILEANKIYKTYGNKFNRQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVSQ 60 +ILEANKI K+YGNK N+QEVLKGID+ + KGEFV IMGASGSGKTTLLNVLSSID+VS Sbjct: 2 VILEANKIRKSYGNKLNKQEVLKGIDIHIEKGEFVSIMGASGSGKTTLLNVLSSIDQVSH 61 Query: 61 GTIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREAH 120 GTI I G + T MKEKQLAEFRKQHLGFIFQ+YNLLDTLTVKEN+LLPLSIT +S++EA+ Sbjct: 62 GTIHINGNDMTAMKEKQLAEFRKQHLGFIFQDYNLLDTLTVKENILLPLSITKLSKKEAN 121 Query: 121 QKFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSASD 180 +KFE+VA ELGIYEL+DKYP EISGGQKQRTSA RAFIHDPSIIFADEPTGALDSKSASD Sbjct: 122 RKFEEVAKELGIYELRDKYPNEISGGQKQRTSAGRAFIHDPSIIFADEPTGALDSKSASD 181 Query: 181 LLNKLADMNTKRQATIVMVTHDAIAASYCSRVVFIRDGQIYTQLNKGDEARQSFFNDIMK 240 LLNKL+ +N KR ATI+MVTHD +AASYC RV+FI+DGQ+YTQLNKG + RQ+FF DIMK Sbjct: 182 LLNKLSQLNQKRNATIIMVTHDPVAASYCGRVIFIKDGQMYTQLNKGGQDRQTFFQDIMK 241 Query: 241 TQSVLGGVQQ 250 TQ VLGGVQ Sbjct: 242 TQGVLGGVQH 251 >ref|NP_244781.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] sp|Q9K619|BCEA_BACHD Bacitracin export ATP-binding protein bceA pir||A84139 ABC transporter (ATP-binding protein) BH3913 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07632.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 253 Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust. Identities = 197/248 (79%), Positives = 224/248 (90%) Query: 2 ILEANKIYKTYGNKFNRQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVSQG 61 ILEA I+K+YG K N+QEVLKGID++V KGEFV IMGASGSGKTTLLNVLSSID++S G Sbjct: 3 ILEATNIHKSYGTKLNKQEVLKGIDIRVEKGEFVSIMGASGSGKTTLLNVLSSIDKLSNG 62 Query: 62 TIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREAHQ 121 +I+IEG E TR+KEK+LA+FRK+HLGFIFQEYNLLDTLTVKEN+LLPLSIT I R+ A + Sbjct: 63 SIKIEGSEMTRLKEKELAQFRKKHLGFIFQEYNLLDTLTVKENILLPLSITKIPRKAADE 122 Query: 122 KFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSASDL 181 KF+QVA ELGIYE+KDKYP EISGGQKQR SAARAFIH+PSIIFADEPTGALDSKSASDL Sbjct: 123 KFKQVATELGIYEIKDKYPNEISGGQKQRASAARAFIHEPSIIFADEPTGALDSKSASDL 182 Query: 182 LNKLADMNTKRQATIVMVTHDAIAASYCSRVVFIRDGQIYTQLNKGDEARQSFFNDIMKT 241 L KL +N K +ATIVMVTHD +AASYCSRV+FI+DGQIYTQL+KGDE+RQ+FF DIMKT Sbjct: 183 LGKLQQLNEKLRATIVMVTHDPVAASYCSRVIFIKDGQIYTQLHKGDESRQTFFKDIMKT 242 Query: 242 QSVLGGVQ 249 Q VLGGVQ Sbjct: 243 QGVLGGVQ 250 >ref|NP_691754.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC12789.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 254 Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/249 (77%), Positives = 227/249 (91%) Query: 2 ILEANKIYKTYGNKFNRQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVSQG 61 IL+A +IYK+YGNKFNRQEVLKGIDL V K EFVGIMGASGSGKTTLLNVLSSID+VSQG Sbjct: 4 ILQAQQIYKSYGNKFNRQEVLKGIDLTVDKREFVGIMGASGSGKTTLLNVLSSIDKVSQG 63 Query: 62 TIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREAHQ 121 I+IEGKEFT MK+KQ+AEFRKQHLGFIFQEYNLLDTLTVKEN+LLPL++ IS ++A Sbjct: 64 KIQIEGKEFTSMKDKQIAEFRKQHLGFIFQEYNLLDTLTVKENILLPLTVQKISNKDAQI 123 Query: 122 KFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSASDL 181 +F+QVA EL I++++DKYP EISGGQKQRTSAARAFIH+PS+IFADEPTGALDSK+AS+L Sbjct: 124 RFQQVAQELEIFDIRDKYPNEISGGQKQRTSAARAFIHNPSMIFADEPTGALDSKAASNL 183 Query: 182 LNKLADMNTKRQATIVMVTHDAIAASYCSRVVFIRDGQIYTQLNKGDEARQSFFNDIMKT 241 LN+L D+N KR +TIVMVTHD +AASYCSRV+FI+DG+IY+QLNKGDE R+SFF+DI+KT Sbjct: 184 LNRLVDLNEKRASTIVMVTHDPLAASYCSRVIFIKDGRIYSQLNKGDETRKSFFDDIIKT 243 Query: 242 QSVLGGVQQ 250 Q VLGGV Sbjct: 244 QGVLGGVHH 252 >ref|NP_765955.1| vraD protein [Staphylococcus epidermidis ATCC 12228] gb|AAO06043.1| vraD protein [Staphylococcus epidermidis ATCC 12228] Length = 252 Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 145/249 (58%), Positives = 194/249 (77%), Gaps = 1/249 (0%) Query: 2 ILEANKIYKTYGNKFNRQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVSQG 61 IL AN++ K YG+K + L I V KGEFV +MG SGSGKTTLLNVLSSID +S G Sbjct: 3 ILTANQLSKVYGHK-QKYRALNNISFSVEKGEFVAVMGPSGSGKTTLLNVLSSIDTISGG 61 Query: 62 TIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREAHQ 121 T+E+EGKE ++ K++A FRKQHLGFIFQ+Y++L TLTVKEN++LPLS+ + E Q Sbjct: 62 TVEVEGKEINKLSHKEVANFRKQHLGFIFQDYSVLPTLTVKENIMLPLSVQKFHKYEMEQ 121 Query: 122 KFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSASDL 181 +++VA LGIY L +KYP+EISGGQ+QRT+AARAF+H P+IIFADEPTGALDSKSA DL Sbjct: 122 NYKEVAEALGIYNLGNKYPSEISGGQQQRTAAARAFVHKPTIIFADEPTGALDSKSAQDL 181 Query: 182 LNKLADMNTKRQATIVMVTHDAIAASYCSRVVFIRDGQIYTQLNKGDEARQSFFNDIMKT 241 L++L DMN + +TI+MVTHD AASY RV+ ++DG I++++ + ++++Q+F+ +IMK Sbjct: 182 LHRLEDMNKQFNSTIMMVTHDPSAASYAERVIMLKDGDIHSEIYQSNDSKQTFYQEIMKL 241 Query: 242 QSVLGGVQQ 250 Q+ LGGV Sbjct: 242 QTALGGVSH 250 >dbj|BAA75354.1| similar to B.subtilis ytsC gene(80%-identity) [Bacillus halodurans] Length = 202 Score = 311 bits (797), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 150/193 (77%), Positives = 172/193 (89%) Query: 2 ILEANKIYKTYGNKFNRQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVSQG 61 ILEA I+K+YG K N+QEVLKGID++V KGEFV IMGASGSGKTTLLNVLSSID++S G Sbjct: 3 ILEATNIHKSYGTKLNKQEVLKGIDIRVEKGEFVSIMGASGSGKTTLLNVLSSIDKLSNG 62 Query: 62 TIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREAHQ 121 +I+IEG E TR+KEK+LA+FRK+HLGFIFQEYNLLDTLTVKEN+LLPLSIT I R+ A + Sbjct: 63 SIKIEGSEMTRLKEKELAQFRKKHLGFIFQEYNLLDTLTVKENILLPLSITKIPRKAADE 122 Query: 122 KFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSASDL 181 KF+QVA ELGIYE+KDKYP EISGGQKQR SAARAFIH+PSIIFADEPTGALDSKSASDL Sbjct: 123 KFKQVATELGIYEIKDKYPNEISGGQKQRASAARAFIHEPSIIFADEPTGALDSKSASDL 182 Query: 182 LNKLADMNTKRQA 194 L KL +N K ++ Sbjct: 183 LGKLQQLNEKLES 195 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 331,428,125 Number of extensions: 12580269 Number of successful extensions: 114296 Number of sequences better than 1.0e-05: 21264 Number of HSP's gapped: 92493 Number of HSP's successfully gapped: 22680 Length of query: 250 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 127 Effective length of database: 423,280,401 Effective search space: 53756610927 Effective search space used: 53756610927 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)