BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0013.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_390895.1| similar to ABC transporter (permease) [Bacillus... 227 2e-58 ref|NP_241347.1| ABC transporter (permiase) [Bacillus halodurans... 223 4e-57 ref|NP_693010.1| ABC transporter permease [Oceanobacillus iheyen... 222 7e-57 ref|NP_388593.1| transmembrane lipoprotein [Bacillus subtilis] >... 218 1e-55 ref|ZP_00035515.1| COG0395: ABC-type sugar transport system, per... 213 4e-54 >ref|NP_390895.1| similar to ABC transporter (permease) [Bacillus subtilis] sp|P53561|YTCP_BACSU Probable ABC transporter permease protein ytcP pir||G69989 ABC transporter (permease) homolog ytcP - Bacillus subtilis gb|AAC00268.1| transporter [Bacillus subtilis] emb|CAB14995.1| ytcP [Bacillus subtilis subsp. subtilis str. 168] Length = 286 Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/263 (43%), Positives = 175/263 (66%), Gaps = 3/263 (1%) Query: 28 PIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYGEVLKNDTIPRAYLNSVFYTALGTFLN 87 P +++ A S + VV K L P F+ +AY + D I ++ L SVF T +GT ++ Sbjct: 24 PFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLLVSVFVTVIGTAVS 83 Query: 88 LLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNPGIIPTYVVVQQLGLTDSVWALVLPNA 147 + +++ AY LS++ GR+ M +V TM + G+IPT++VV+ LGL DS WAL+LP A Sbjct: 84 MFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLLDSYWALILPTA 143 Query: 148 IWTMELIILKSFYENMSSQIREAALIDGASEYRILFNIVIPLSKPALASIGLFYFMGHWN 207 I LIILK+F++N+ S + E+A IDG ++ I F IV+PLS PA+A+I LFY + +WN Sbjct: 144 INAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAVTYWN 203 Query: 208 SFFLPLIYLNDADKYPLQVVLRDMLIYSAENDAGLVDRSALAP---QSIKNATIVLSMIP 264 ++ ++YLND+ K+P+QV+LR ++I S+ + + + +P Q+IK A IV++ IP Sbjct: 204 TYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEMGSGSPPPEQTIKMAVIVVATIP 263 Query: 265 VLLIYPFAQKYFAKGVMLGSEKG 287 VLL+YPF QK+FAKG +LGS KG Sbjct: 264 VLLVYPFIQKHFAKGALLGSVKG 286 >ref|NP_241347.1| ABC transporter (permiase) [Bacillus halodurans] pir||A83710 ABC transporter (permiase) BH0481 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04200.1| ABC transporter (permiase) [Bacillus halodurans] Length = 293 Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 115/264 (43%), Positives = 172/264 (65%), Gaps = 4/264 (1%) Query: 28 PIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYGEVLKNDTIPRAYLNSVFYTALGTFLN 87 P V+I A S + V+Q + LFP F+ +AY + D I R+ + S+ T +GT + Sbjct: 30 PFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDIIFRSLIISILVTVVGTGFS 89 Query: 88 LLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNPGIIPTYVVVQQLGLTDSVWALVLPNA 147 + T++ AY LS+K GR+ M +V TM + G+IPT++VV+ LGL D+ WAL++P A Sbjct: 90 MFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLGLLDTYWALIIPTA 149 Query: 148 IWTMELIILKSFYENMSSQIREAALIDGASEYRILFNIVIPLSKPALASIGLFYFMGHWN 207 I LIILK+F++N+ + E+A IDG ++ I F IV PLS PA+A+I LFY + +WN Sbjct: 150 INAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFPLSMPAIATISLFYAVTYWN 209 Query: 208 SFFLPLIYLNDADKYPLQVVLRDMLIYSAENDAGLVDRSA---LAP-QSIKNATIVLSMI 263 +F ++YLND+ +P+QV+LR ++I S+ L + A + P Q+IK A IV++ I Sbjct: 210 TFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAGFVMPPEQTIKMAVIVVATI 269 Query: 264 PVLLIYPFAQKYFAKGVMLGSEKG 287 PVL++YPF QK+FAKG +LGS KG Sbjct: 270 PVLIVYPFIQKHFAKGALLGSVKG 293 >ref|NP_693010.1| ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC14045.1| ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 291 Score = 222 bits (566), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 117/280 (41%), Positives = 176/280 (62%), Gaps = 2/280 (0%) Query: 10 FGVINXXXXXXXXXXXXYPIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYGEVLKNDTI 69 F VIN P +++ S + + + + LFP F+ AY + DTI Sbjct: 12 FDVINYVLLGLLALVMIIPFIHVVGSSFATSAEIAETSFLLFPTEFSLNAYKYIFSTDTI 71 Query: 70 PRAYLNSVFYTALGTFLNLLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNPGIIPTYVV 129 RA L SV T GT ++ + + AY LS+K GR+FF IV T+ N G+IPT++V Sbjct: 72 LRALLISVTVTVGGTLWSMFLSTLTAYGLSRKDLVGRRFFNFLIVFTILFNGGMIPTFLV 131 Query: 130 VQQLGLTDSVWALVLPNAIWTMELIILKSFYENMSSQIREAALIDGASEYRILFNIVIPL 189 V+Q GL +S+WAL++P +I +IIL+SF+ N+ + + E+A IDGAS++ ILF IVIP Sbjct: 132 VEQTGLLNSLWALIIPVSINAFNMIILRSFFMNLPAGLEESAKIDGASDFGILFRIVIPC 191 Query: 190 SKPALASIGLFYFMGHWNSFFLPLIYLNDADKYPLQVVLRDMLIY-SAENDAGLVDRSAL 248 S PA+A+I LFY + +WN++ ++Y++D+ K+P+QV+LR +++ S N G Sbjct: 192 SLPAIATISLFYAVTYWNTYMHAILYISDSAKWPVQVLLRQIVVLASGINYDGATYTDVP 251 Query: 249 APQ-SIKNATIVLSMIPVLLIYPFAQKYFAKGVMLGSEKG 287 P+ ++K ATIV++ +PVLL+YPF QKYFAKG +LGS KG Sbjct: 252 PPEVTVKMATIVVATVPVLLVYPFLQKYFAKGALLGSVKG 291 >ref|NP_388593.1| transmembrane lipoprotein [Bacillus subtilis] sp|P39129|LPLC_BACSU LplC protein pir||B69653 transmembrane lipoprotein lplC - Bacillus subtilis gb|AAA22576.1| transmembrane protein emb|CAB12531.1| transmembrane lipoprotein [Bacillus subtilis subsp. subtilis str. 168] Length = 295 Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 118/282 (41%), Positives = 172/282 (60%), Gaps = 6/282 (2%) Query: 10 FGVINXXXXXXXXXXXXYPIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYGEVLKNDTI 69 F V N P +YI A S + + Q F+FPK F +AY V T Sbjct: 16 FDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTF 75 Query: 70 PRAYLNSVFYTALGTFLNLLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNPGIIPTYVV 129 R+ S+F T +GT + L FT AYPL+++ GR + ++ +M + G+IPTY+V Sbjct: 76 LRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLV 135 Query: 130 VQQLGLTDSVWALVLPNAIWTMELIILKSFYENMSSQIREAALIDGASEYRILFNIVIPL 189 V+ LGL D+ WAL+LP AI LII+K+F++ + ++ E+A IDG SE + + I +PL Sbjct: 136 VKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPL 195 Query: 190 SKPALASIGLFYFMGHWNSFFLPLIYLNDADKYPLQVVLRDMLIYS---AENDAGLVDRS 246 SKP +A+ LFY +G WN FF L+Y+ND+ K+PLQ+VLR + I S A N G ++ Sbjct: 196 SKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLTATN--GDTMQN 253 Query: 247 ALAP-QSIKNATIVLSMIPVLLIYPFAQKYFAKGVMLGSEKG 287 A+ P Q IK A IV++ +P+L +YPF QK+FAKG+++GS KG Sbjct: 254 AVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 >ref|ZP_00035515.1| COG0395: ABC-type sugar transport system, permease component [Enterococcus faecium] Length = 290 Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 179/287 (62%), Gaps = 4/287 (1%) Query: 2 VGERKISWFGVINXXXXXXXXXXXXYPIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYG 61 +GER + F N P + I A S + T VV K LFP F+ +AY Sbjct: 7 IGERSFTLF---NNTFLILLALICIVPFLNIIATSFASTQEVVAKKFILFPTTFSLDAYR 63 Query: 62 EVLKNDTIPRAYLNSVFYTALGTFLNLLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNP 121 +L TI RA S+ T +GT +++ T++ AY LS+K FGR F +V +M + Sbjct: 64 YILSTPTIFRALAVSIGVTGVGTIVSMCATSLMAYGLSRKYLFGRGFVNFLVVFSMLFSG 123 Query: 122 GIIPTYVVVQQLGLTDSVWALVLPNAIWTMELIILKSFYENMSSQIREAALIDGASEYRI 181 G+IPT++VV+ LGL +S WA++LP A+ M +II+++F++ + + E+A +DG +++ + Sbjct: 124 GMIPTFLVVRSLGLVNSYWAMILPVAVNAMNMIIMRNFFQALPDSLEESAKMDGCTDFGV 183 Query: 182 LFNIVIPLSKPALASIGLFYFMGHWNSFFLPLIYLNDADKYPLQVVLRDMLIYSAENDAG 241 F I++PL+ P++A+I LFY + +WN++ ++Y+ND+ K+P+Q++LR ++I S+ A Sbjct: 184 FFKIMLPLALPSIATISLFYAVTYWNTYMTAILYINDSSKWPIQILLRQIVIVSSGMQAE 243 Query: 242 LVDRSALAP-QSIKNATIVLSMIPVLLIYPFAQKYFAKGVMLGSEKG 287 + P Q++K A IV++ +P+L++YPF QKYF KG ++GS KG Sbjct: 244 SSAVDVIPPAQTVKMAVIVIATVPMLIVYPFVQKYFVKGALVGSVKG 290 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.142 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 393,846,922 Number of extensions: 15598855 Number of successful extensions: 48317 Number of sequences better than 1.0e-05: 1301 Number of HSP's gapped: 46614 Number of HSP's successfully gapped: 1301 Length of query: 287 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 163 Effective length of database: 420,565,302 Effective search space: 68552144226 Effective search space used: 68552144226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 125 (52.8 bits)