BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0031.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389634.1| similar to hypothetical proteins [Bacillus subt... 108 7e-23 ref|NP_656390.1| Acetyltransf, Acetyltransferase (GNAT) family [... 102 5e-21 ref|NP_832223.1| Ribosomal-protein-serine acetyltransferase [Bac... 99 4e-20 ref|ZP_00015743.1| COG1670: Acetyltransferases, including N-acet... 94 2e-18 ref|ZP_00111847.1| COG1670: Acetyltransferases, including N-acet... 84 2e-15 >ref|NP_389634.1| similar to hypothetical proteins [Bacillus subtilis] pir||D69887 conserved hypothetical protein ynaD - Bacillus subtilis gb|AAB41084.1| YnaD [Bacillus subtilis] emb|CAB13636.1| ynaD [Bacillus subtilis subsp. subtilis str. 168] Length = 170 Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 9/175 (5%) Query: 4 LETQRLTIRGFQPEDWEDLHEYLSREEVVRYEPYGVFDEQASQAEALRRSADPA-FWAVC 62 + T+RL IR F+ +DW+ ++EY S V++Y P GVF E+ ++A + D A + V Sbjct: 3 ITTKRLLIREFEFKDWQAVYEYTSDSNVMKYIPEGVFTEEDAKAFVNKNKGDNAEKFPVI 62 Query: 63 LKESGKMIGNLYFQQQEPLTFRTWELGYVFNSAFHNKGYAAEACQRLLEYAFCDQQVRRV 122 L++ +IG++ F + T+E+G+VFN + NKGYA+EA Q +LEY F + + R+ Sbjct: 63 LRDEDCLIGHIVFYKY--FGEHTYEIGWVFNPNYQNKGYASEAAQAILEYGFKEMNLHRI 120 Query: 123 TAHCDPRNTPSWXXXXXXXXXXXXXXXXTGYFKHDHEGHPLWHDTYAYGILDSEW 177 A C P N PS+ G+FK W D Y Y IL+ EW Sbjct: 121 IATCQPENIPSYRVMKKIGMRRE------GFFKKCIPKGNEWWDEYYYAILEEEW 169 >ref|NP_656390.1| Acetyltransf, Acetyltransferase (GNAT) family [Bacillus anthracis A2012] ref|NP_844902.1| acetyltransferase, GNAT family [Bacillus anthracis str. Ames] gb|AAP26388.1| acetyltransferase, GNAT family [Bacillus anthracis str. Ames] Length = 168 Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 9/174 (5%) Query: 4 LETQRLTIRGFQPEDWEDLHEYLSREEVVRYEPYGVFDEQASQAEALRRSADPA-FWAVC 62 ++ +RL IR F+ +DWE +HEY S +V++Y P GVF E+ ++ + + A + V Sbjct: 3 IKAERLLIRKFEFKDWEAVHEYTSDSDVMKYIPEGVFTEEDTRNFVNKNMGENAKNFPVI 62 Query: 63 LKESGKMIGNLYFQQQEPLTFRTWELGYVFNSAFHNKGYAAEACQRLLEYAFCDQQVRRV 122 L ++G++ F + T+E+G+VFN + NKGYA+EA Q L+Y F + ++ R+ Sbjct: 63 LIGENILVGHIVFHKY--FGEHTYEIGWVFNPKYFNKGYASEAAQATLKYGFKEMKLHRI 120 Query: 123 TAHCDPRNTPSWXXXXXXXXXXXXXXXXTGYFKHDHEGHPLWHDTYAYGILDSE 176 A C P NTPS+ GYFK W D Y Y IL+ E Sbjct: 121 IATCQPENTPSYRVMEKIGMRRE------GYFKKCIPHGNEWWDEYYYAILEEE 168 >ref|NP_832223.1| Ribosomal-protein-serine acetyltransferase [Bacillus cereus ATCC 14579] gb|AAP09424.1| Ribosomal-protein-serine acetyltransferase [Bacillus cereus ATCC 14579] Length = 168 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 9/174 (5%) Query: 4 LETQRLTIRGFQPEDWEDLHEYLSREEVVRYEPYGVFDEQASQAEALRRSADPA-FWAVC 62 ++T+RL IR F+ +DW+ +HEY S V++Y P GVF E+ ++ + A + V Sbjct: 3 IKTERLLIRKFEFKDWQAVHEYTSDINVMKYIPEGVFTEENTRNFVNENIGENAKNFPVV 62 Query: 63 LKESGKMIGNLYFQQQEPLTFRTWELGYVFNSAFHNKGYAAEACQRLLEYAFCDQQVRRV 122 L +I ++ F + T+E+G+VFN + NKGYA+EA Q LEY F + ++ R+ Sbjct: 63 LIHKDILIDHIVFHKY--FGEHTYEIGWVFNPKYFNKGYASEAAQATLEYGFKEMKLHRI 120 Query: 123 TAHCDPRNTPSWXXXXXXXXXXXXXXXXTGYFKHDHEGHPLWHDTYAYGILDSE 176 A C P+NTPS+ GYF+ W D Y Y IL+ E Sbjct: 121 IATCQPQNTPSYRVMEKIGMRRE------GYFRKCIPHGNEWWDEYYYAILEEE 168 >ref|ZP_00015743.1| COG1670: Acetyltransferases, including N-acetylases of ribosomal proteins [Rhodospirillum rubrum] Length = 180 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 1 MEVLETQRLTIRGFQPEDWEDLHEYLSREEVVRYEPYGVFDEQASQAEALRRSADPAFWA 60 M+ ++T RL +R F+ D DL YL + V + + D A++AE RS A Sbjct: 5 MDPIQTDRLILRNFKQGDAADLLAYLHQPRVSCFLSLKLEDLGAAEAEVKTRSTSDEHIA 64 Query: 61 VCLKESGKMIGNLYFQQQEPLTFRTWELGYVFNSAFHNKGYAAEACQRLLEYAFCDQQVR 120 VCL+ K+IG+++ + P T+ +G+ FN+ F G A+EA + L EY F ++ R Sbjct: 65 VCLRTPDKLIGDMFCMAEPP---DTYSVGWNFNADFQGAGLASEAARALFEYLFTVKEAR 121 Query: 121 RVTAHCDPRNTPSWXXXXXXXXXXXXXXXXTGYFKHDHEGHPLWHDTYAYGILDSEWL 178 R+ A + N PS F+ D EG P++ +T Y +L EW+ Sbjct: 122 RLYAFVEEDNLPSRRLCERLGMRKEGLFKEFISFRTDDEGVPVFENTMQYALLRKEWV 179 >ref|ZP_00111847.1| COG1670: Acetyltransferases, including N-acetylases of ribosomal proteins [Nostoc punctiforme] Length = 189 Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 14/181 (7%) Query: 4 LETQRLTIRGFQPEDWEDLHEYLSREEVVRYEPYGVFDEQAS----QAEALRRSADPA-- 57 LETQRL +R F DW +H+Y S +EVVRY +G E+ + Q E + +P Sbjct: 5 LETQRLILRDFVESDWLAVHQYASDDEVVRYLTFGPNSEEDTKNFLQREISLQGEEPRQH 64 Query: 58 -FWAVCLKESGKMIGNLYFQQQEPLTFRTWELGYVFNSAFHNKGYAAEACQRLLEYAFCD 116 AV LK ++IG + + + +T +GY F F +GYA EA + ++ + F + Sbjct: 65 FALAVTLKTQQQLIGVCHISVTD-IDNKTGSIGYCFTKEFWGQGYATEAVKAVVSFGFQE 123 Query: 117 QQVRRVTAHCDPRNTPSWXXXXXXXXXXXXXXXXTGYFKHDHEGHPLWHDTYAYGILDSE 176 + R+ A C P N S GY + H W D++ Y IL+ E Sbjct: 124 LGLHRIFATCHPENIAS------ARVMQKIGMQQEGYLREHHWIKGQWRDSWLYAILEHE 177 Query: 177 W 177 W Sbjct: 178 W 178 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.134 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 274,147,572 Number of extensions: 9487183 Number of successful extensions: 19268 Number of sequences better than 1.0e-05: 47 Number of HSP's gapped: 19312 Number of HSP's successfully gapped: 47 Length of query: 190 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 71 Effective length of database: 434,140,797 Effective search space: 30823996587 Effective search space used: 30823996587 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)