BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0565.0017.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00019884.1| hypothetical protein [Chloroflexus aurantiacus] 91 4e-17 ref|NP_945939.1| putative PAN2 protein ; short shain alcohol deh... 87 4e-16 ref|NP_819970.1| oxidoreductase, short chain dehydrogenase/reduc... 79 2e-13 gb|EAB13259.1| unknown [environmental sequence] 79 2e-13 gb|EAK06008.1| unknown [environmental sequence] 78 2e-13 >ref|ZP_00019884.1| hypothetical protein [Chloroflexus aurantiacus] Length = 292 Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 7/260 (2%) Query: 1 MTIGQQHRG-TALITGANNGIGLELTRKMLAEGWQIIALIRSSFPGDDS---LVSGAVKS 56 +T+ Q +G T ++TGAN+GIG R++ A G ++I + RS G+ + ++ A + Sbjct: 4 VTMEQIMQGKTVIVTGANSGIGYVTARELAAMGARVIMVCRSQSKGEAARQRIMQEAKGA 63 Query: 57 KQLRIYKADLSDFTALKRALNEIRLQEQQIDLLFNNAGGSFPELLYSKQGRELHFELQTV 116 + + AD + +++RA +I + +ID+L NNAG E L S G E+ F + + Sbjct: 64 PEPELVLADFASLASVRRAAGDILERCPRIDVLVNNAGLFVSEPLASADGYEMTFAVNHL 123 Query: 117 VPYIIIMXXXXXXXXXXXXTVVNTSSNAAMTVRHFDPETLEHPTKFKKLLGPYAASKLAL 176 P+++ ++N SS A + R P+ + P + + Y+ SKL Sbjct: 124 APFLLTNLLLERIIASAPARIINVSSFAHVAGRIAIPQ-IASPQR-PNIAQAYSDSKLCN 181 Query: 177 SLWTRELAPQLAAAGIMIRSADPGANNTLRSGKDSGLPFWLKPVMKLFFPHPSHGAGL-L 235 L+T ELA +L +G+ S PGA T + GL + + + F P HGA + Sbjct: 182 ILFTNELARRLQGSGVTANSLHPGAVATNFAADSRGLFAFFFRLARPFMLSPEHGAATSI 241 Query: 236 YNAALGRHSKLPGVFLIKDQ 255 Y A+ +++ G + ++ + Sbjct: 242 YLASSPEVAEISGQYFVRKK 261 >ref|NP_945939.1| putative PAN2 protein ; short shain alcohol dehydrogenase [Rhodopseudomonas palustris CGA009] emb|CAE26030.1| putative PAN2 protein ; short shain alcohol dehydrogenase [Rhodopseudomonas palustris CGA009] Length = 297 Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 8/237 (3%) Query: 1 MTIGQQHRGTALITGANNGIGLELTRKMLAEGWQIIALIRSSFPGDDSL--VSGAVKSKQ 58 M+ +H+ TAL+TGAN+G+G + + A+G ++ + R G+ +L V A ++ Sbjct: 1 MSTSPEHKRTALVTGANSGLGKAIVTALAADGLRVGLVARDRGRGEAALADVRAATGNQD 60 Query: 59 LRIYKADLSDFTALKRALNEIRLQEQQIDLLFNNAGGSFPELLYSKQGRELHFELQTVVP 118 L ++ ADL+D +++ ++R + ++ LL NNAG +FPE S QG E F + + P Sbjct: 61 LHLFVADLADQESIRALAQDVRARFDRLHLLINNAGTAFPERRLSPQGIERAFAINHLGP 120 Query: 119 YIIIMXXXXXXXXXXXXTVVNTSSNAAMTVRHFDPETLEHPTKFKKLLGPYAASKLALSL 178 +++ +VN + + D + L + ++ YA SKL Sbjct: 121 FLLTNLLLDLIKASAPARIVNVGTRIDAAI---DFDDLNWDKRPYGMMKGYAQSKLGNLH 177 Query: 179 WTRELAPQLAAAGIMIRSADPGANNTLRSGKDSGLPFWLKPVMKL---FFPHPSHGA 232 +T ELA +L +G+ + PG + G D + K + KL P P A Sbjct: 178 FTFELARRLEGSGVTVNCVFPGVFKSNLGGTDGAQGLFWKLLAKLGGWAIPKPESAA 234 >ref|NP_819970.1| oxidoreductase, short chain dehydrogenase/reductase family [Coxiella burnetii RSA 493] gb|AAO90484.1| oxidoreductase, short chain dehydrogenase/reductase family [Coxiella burnetii RSA 493] Length = 232 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 18/194 (9%) Query: 12 LITGANNGIGLELTRKMLAEGWQIIALIRSSFPGDDSLVSGAVKSKQLRIYKADLSDFTA 71 LITGAN GIGLEL ++ LA GW + R + A K + L +++ D+ D A Sbjct: 5 LITGANRGIGLELVKQYLAAGWHVDGCYRDKKASNSLFELAAEKKQSLTLHELDVLDEKA 64 Query: 72 LKRALNEIRLQEQQIDLLFNNAGGSFPEL-----LYSKQGRELHFELQTVVPYIIIMXXX 126 ++ AL E L+ Q ID+LFNNAG S L ++ + F++ T+ P +++ Sbjct: 65 IQ-ALGE-HLKNQPIDILFNNAGVSAKNLREFGSIHDTENACEVFKINTIAPLLMVQALL 122 Query: 127 XXXXXXXXXTVVNTSSNAAMTVRHFDPETLEHPTKFKKLLGPYAASKLALSLWTRELAPQ 186 ++N SS ++ + Y ASK AL+ T+ LA Sbjct: 123 ESVEKSEKKLIINMSSEMGSIAQNVNGNYY-----------VYRASKSALNAITKSLAID 171 Query: 187 LAAAGIMIRSADPG 200 L GI + S +PG Sbjct: 172 LKRRGITVISMNPG 185 >gb|EAB13259.1| unknown [environmental sequence] Length = 227 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 22/224 (9%) Query: 2 TIGQQHRGTALITGANNGIGLELTRKMLAEGWQIIALIRSSFPGDDSLVSGAVKSKQLRI 61 ++ + G LITG+N GIGLE T++ L GW +IA R +D G L I Sbjct: 3 SLAEDETGIVLITGSNRGIGLEFTKQYLERGWTVIATARKPEKAEDLKQLGIQYPDSLSI 62 Query: 62 YKADLSDFTALKRALNEIRLQEQQIDLLFNNAG--GSFPELLYSK---QGRELHFELQTV 116 ++ D++D + E L++Q IDLL NNAG G P+ ++ + E + TV Sbjct: 63 HQLDVTDNERIDELAKE--LEDQPIDLLLNNAGISGYIPDQIFGRLDYDSFEQVLAVNTV 120 Query: 117 VPYIIIMXXXXXXXXXXXXTVVNTSSNAAMTVRHFDPETLEHPTKFKKLLGPYAASKLAL 176 P + +V+ SS+ +D E+ + Y +SK AL Sbjct: 121 APLKMAEAFYTHIKSSNLKKIVSVSSSEGSIGGAYDDES--------GRMYFYRSSKSAL 172 Query: 177 SLWTRELAPQLAAAGIMIRSADPGANNT--LRSGKDSGLPFWLK 218 ++ LA QL + GI + +PG +T +R G+PF L+ Sbjct: 173 NMVMVNLAFQLKSRGIAVGLVNPGPTDTDFMR-----GIPFPLR 211 >gb|EAK06008.1| unknown [environmental sequence] Length = 245 Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 22/224 (9%) Query: 2 TIGQQHRGTALITGANNGIGLELTRKMLAEGWQIIALIRSSFPGDDSLVSGAVKSKQLRI 61 ++ + G LITG+N GIGLE T++ L GW +IA R +D G +L I Sbjct: 3 SLAEDETGIVLITGSNRGIGLEFTKQYLERGWTVIATARKPEKAEDLKQLGIQYPDRLSI 62 Query: 62 YKADLSDFTALKRALNEIRLQEQQIDLLFNNAG--GSFPELLYSK---QGRELHFELQTV 116 ++ D++D + E L++Q IDLL NNAG G P+ ++ + E + TV Sbjct: 63 HQLDVTDNERIDELAKE--LEDQPIDLLLNNAGISGYIPDQIFGRLDYDSFEQVLAVNTV 120 Query: 117 VPYIIIMXXXXXXXXXXXXTVVNTSSNAAMTVRHFDPETLEHPTKFKKLLGPYAASKLAL 176 P + +V+ SS+ +D E+ + Y +SK AL Sbjct: 121 APLKMAEAFYTHIKSSNLKKIVSVSSSEGSIGGAYDDES--------GRMYFYRSSKSAL 172 Query: 177 SLWTRELAPQLAAAGIMIRSADPGANNT--LRSGKDSGLPFWLK 218 ++ LA QL + GI + +PG +T +R G+PF L+ Sbjct: 173 NMVMVNLAFQLKSRGIAVGLVNPGPTDTDFMR-----GIPFPLR 211 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 386,587,508 Number of extensions: 14435062 Number of successful extensions: 52859 Number of sequences better than 1.0e-05: 280 Number of HSP's gapped: 54075 Number of HSP's successfully gapped: 280 Length of query: 287 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 163 Effective length of database: 420,565,302 Effective search space: 68552144226 Effective search space used: 68552144226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)