BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0565.0005.p (882 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_623873.1| Ribonucleotide reductase alpha subunit [Thermoa... 578 e-163 ref|ZP_00055302.1| COG0209: Ribonucleotide reductase, alpha subu... 397 e-109 ref|ZP_00005311.1| COG0209: Ribonucleotide reductase, alpha subu... 390 e-107 gb|EAI86818.1| unknown [environmental sequence] 385 e-105 gb|EAK54058.1| unknown [environmental sequence] 382 e-104 >ref|NP_623873.1| Ribonucleotide reductase alpha subunit [Thermoanaerobacter tengcongensis] gb|AAM25477.1| Ribonucleotide reductase alpha subunit [Thermoanaerobacter tengcongensis] Length = 691 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 317/800 (39%), Positives = 455/800 (56%), Gaps = 116/800 (14%) Query: 89 MWDRLASAMASVESTPELQEEWTGKFRSILDDWKLVPGGRIAAGAGASEELTLFNCYVVP 148 M+ R+A A+A+ E E+ F ++ +WK +PGGRI AGAG E+T FNC+V+P Sbjct: 1 MFKRVAKAIATNEKEEEM-------FYKVMSEWKFIPGGRILAGAGTGREVTYFNCFVIP 53 Query: 149 ----SPK---DSRGGIMQTLSEMTEIMARGGGVGINLSSLRPRRAIVRXXXXXXXXXXXX 201 PK DSR IM T+++M EI +RGGGVGIN S+LRPR A V+ Sbjct: 54 VEANDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTLRPRGAYVKGVGGTSSGAVSW 113 Query: 202 XXLFSYTTGLIEQGGSRRGALMLMINDWHPDVVDFITVKQTMGQVTNANLSVCVSNSFMK 261 + +EQGGSRR ALM M+ DWHPD+ +FI VK+ + ++ ANLSV VS++FM+ Sbjct: 114 MLAANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKKDLTKMQQANLSVAVSDAFME 173 Query: 262 AVKEDLDWELVFPDTTDPDYDAVWDGDLDKWKADGRAVIPYRTVKARDVWHTIIESAWKS 321 AV +D W+L FPDT+ P+YDA W GDL++WKA G + Y+ + AR++W+ I+ +AW+S Sbjct: 174 AVAQDKMWKLEFPDTSHPNYDAEWKGDLNEWKAKGYPTVVYKEIPARELWNKIVTAAWES 233 Query: 322 AEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPGWGVCNLSAVNLSKFYDAENHDVDW 381 AEPGVVF+E YN++SN++Y II TNPCGE GL +GVCNL A+NL F EN +++ Sbjct: 234 AEPGVVFLERYNKLSNTYYITKIISTNPCGELGLEPYGVCNLGAINLVAF--VENGKINF 291 Query: 382 ADLATTTRYSVRFLDNVIDKTPYHFPENEANQRKERRVGLGTMGLAELMIKLNIRYGSPE 441 +L T + +VRFLDNV+D Y P+N+ +K RRVGLG MGLA+ +I +N+RYGS E Sbjct: 292 EELEETVKIAVRFLDNVLDLGAYVLPQNKEMAQKLRRVGLGLMGLADALILMNLRYGSEE 351 Query: 442 SLEFLDKLYGXXXXYGFMAREAYLASSEIAGEKGSFQAFDTEKYLLSGFMKNITETYPEV 501 SL+ +++ + AY AS E+A EKG F F +KYL F++ + + ++ Sbjct: 352 SLKATEEIVRR------IRDAAYRASVELAKEKGPFPEFVADKYLKGQFIQRLPK---DI 402 Query: 502 GEAIRKNGMRNVTVITQAPXXXXXXXXXXXXXIEPYFAFKYFRQSRLGYDEQFVPIAQEW 561 + I K G+RN T++TQAP IEP FA +Y R+ R G + W Sbjct: 403 RDEIAKYGIRNATILTQAPTGTTSILAGVSSGIEPNFAKEYVRKDRTG-----THTVKHW 457 Query: 562 LEAHPGEELPDYFVTSMDLSAKDHIRAQAAIQRWVDSSISKTANCPSDFTVEETAELYEM 621 L +P FV++ +++ ++H++ QA +Q+++DSSISKT N P TV++ +Y + Sbjct: 458 LADYPA------FVSAHEVTPEEHVKMQAVLQKYIDSSISKTINLPRTATVDDIDNIYRL 511 Query: 622 AFDLGCKGVTIYRDGSRDVQVLETSKKEDKKDXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 681 A++LGCKG+T+YRDGSR+ ++ +K ++K Sbjct: 512 AYELGCKGITVYRDGSREGVLVTDTKPQEK------------------------------ 541 Query: 682 GSAVDKQYKKRPQVLRGATYKINTPFGMAYITINDLDGIPAEIFLNVGKAGSDVFAMAEA 741 + +RP VL+G T +I TP G AY+TIN +D P E+F+N+G+AGSDV A EA Sbjct: 542 -----TKITERPPVLKGITKRIETPLGRAYVTINFIDNKPFEVFVNIGRAGSDVAAFTEA 596 Query: 742 LGRVCSLFLRYGDHGEKVELLIKHLKXXXXXXXXXXXXNRVESIADAVAKALETHVLNNA 801 + R+ SL LR G VE +I+ L NRV S+ DA+ KAL N Sbjct: 597 IARLISLALR---GGVAVEDIIEQLVGIGGATTIGFGENRVLSVPDAIGKALR-----NG 648 Query: 802 HDDHVPAPIAATLELDFNEALSAELKSSVPAAAXXXXXXXXXXXXXXXXXXRDLCPSCGS 861 ++ +SV +A D+CP CG Sbjct: 649 YEQQ---------------------GNSVKVSATNV----------------DICPVCGM 671 Query: 862 ASLINIEGCKTCSNCGYSRC 881 A+ + EGCKTC NCGYS+C Sbjct: 672 ATFVYTEGCKTCLNCGYSQC 691 >ref|ZP_00055302.1| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum magnetotacticum] Length = 775 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 266/818 (32%), Positives = 395/818 (48%), Gaps = 85/818 (10%) Query: 82 IEKTPEEMWDRLASAMASVESTPELQEEWTGKFRSILDDWKLVPGGRIAAGAGASEELTL 141 ++ T E+ W R+A ++A+ E+ P + W +F ++D+K++P GRI +GAG ++TL Sbjct: 26 LDGTIEDTWRRVARSLAATEAEPAV---WEQRFFESMEDFKVLPAGRIISGAGTDRKVTL 82 Query: 142 FNCYVVPSPKDSRGGIMQTLSEMTEIMARGGGVGINLSSLRPRRAIVRXXXXXXXXXXXX 201 FNC+V+ D GI + L E M +GGG+G + S+LRP+ A V+ Sbjct: 83 FNCFVMGDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSF 142 Query: 202 XXLFSYTTGLIEQGGSRRGALMLMINDWHPDVVDFITVKQTMGQVTNANLSVCVSNSFMK 261 ++ I GSRRGA+M + HPD+ FI K+ G++ NLSV V++ FM+ Sbjct: 143 MDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKREAGRLRMFNLSVLVTDPFMQ 202 Query: 262 AVKEDLDWELVFPDTTDPDYDAVWDGDLDKWKADGRAVIPYRTVKARDVWHTIIESAWKS 321 AVKED WEL F T Y+++ AR++W+ I+ + + Sbjct: 203 AVKEDGPWELTFKGVT------------------------YKSLPARELWNKIMRATYSY 238 Query: 322 AEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPGWGVCNLSAVNLSKFYDAENHD--- 378 AEPGV+F++ N+++N Y I TNPCGEQ LP +GVC L ++NL++ D D Sbjct: 239 AEPGVIFIDRINRLNNLSYCEDIHATNPCGEQPLPAYGVCLLGSLNLARLVDRPFEDGAR 298 Query: 379 VDWADLATTTRYSVRFLDNVIDKTPYHFPENEANQRKERRVGLGTMGLAELMIKLNIRYG 438 +D L R +VR +DNVID + Y + +RR+GLG GLA+ +I RYG Sbjct: 299 LDLDKLDRLVRVAVRMMDNVIDVSNYPLDRHRHEALSKRRIGLGITGLADALILCGARYG 358 Query: 439 SPESLEFLDKLYGXXXXYGFMAREAYLASSEIAGEKGSFQAFDTEKYLLSGFMKNITETY 498 E++ + + R AYLAS+E+A EKG+F +D EKYL ++ + Sbjct: 359 GREAIRLTETWMAA------IRRSAYLASAELAREKGAFPLYDAEKYLAGETIQGLDS-- 410 Query: 499 PEVGEAIRKNGMRNVTVITQAPXXXXXX-XXXXXXXIEPYFAFKYFRQ--SRLG--YDEQ 553 +V EAIR +G+RN + + AP +EP FAF Y R R G +E+ Sbjct: 411 -DVIEAIRTHGIRNALLTSIAPTGTISLFADNVSSGLEPVFAFTYTRGVLQRDGTRREEE 469 Query: 554 FVPIAQEWLEAHPGEE--LPDYFVTSMDLSAKDHIRAQAAIQRWVDSSISKTANCPSDFT 611 A GE LP YFV ++ L+ DH+ QAA+Q++VDSSISKT N P D + Sbjct: 470 VSDYAYRLFRRLRGENAPLPTYFVDALSLTPGDHVVMQAAVQKYVDSSISKTINVPEDIS 529 Query: 612 VEETAELYEMAFDLGCKGVTIYRDGSRDVQVLETSKKEDKKDXXXXXXXXXXXXXXXXXX 671 + ++Y A++LGCKG T YR VLE K+ +D Sbjct: 530 FDAFKDVYTQAYELGCKGCTTYRPNDITGSVLEVKKEARPED-------DAEPELPLEKT 582 Query: 672 XXXXXXXXXQGSAVDKQYKKRPQVLRGATYKINTPFG--MAYITINDL--DG--IPAEIF 725 G Q RP+ L G+TYK+ P YIT+ND+ DG P E+F Sbjct: 583 RTRYTDPLDSGIVHLTQPLDRPEALPGSTYKVRWPDSDHAMYITLNDIIQDGRRRPFEVF 642 Query: 726 LNVGKAGSDVFAMAEALGRVCSLFLRYGDHGEKVELLIKHLKXXXXXXXXXXXXNR-VES 784 +N + FA AL R+ S R G V +++ LK R V S Sbjct: 643 IN--SKNMEHFAWTVALTRMISAVFR---RGGDVAFVVEELKAVFDPRGGQWVGGRYVPS 697 Query: 785 IADAVAKALETHVLNNAHDDHVPAPIAATLELDFNEALSAELKSSVPAAAXXXXXXXXXX 844 + A+ + +E H++ +P P AA ++ + E + V Sbjct: 698 LLAAIGEVIERHMIAIG---FLPDPKAAREPVEARDDRYGEERKVVNGETRLRH------ 748 Query: 845 XXXXXXXXRDLCPSCGSASLINIEGCKTCSNCGYSRCG 882 CP C +L+ EGC TC++CGYS+CG Sbjct: 749 -----------CPKCNQPALLRSEGCDTCTSCGYSKCG 775 >ref|ZP_00005311.1| COG0209: Ribonucleotide reductase, alpha subunit [Rhodobacter sphaeroides] Length = 778 Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust. Identities = 251/704 (35%), Positives = 358/704 (50%), Gaps = 77/704 (10%) Query: 82 IEKTPEEMWDRLASAMASVESTPELQEEWTGKFRSILDDWKLVPGGRIAAGAGASEELTL 141 ++ + E+ W R+A A+A VE+ P L W +F S L+D++ +P GRI AGAG +TL Sbjct: 27 VDGSVEDTWRRIARALAEVEAEPAL---WEDRFYSALEDFRFLPAGRITAGAGTGRTVTL 83 Query: 142 FNCYVVPSPKDSRGGIMQTLSEMTEIMARGGGVGINLSSLRPRRAIVRXXXXXXXXXXXX 201 FNC+V+ + DS GI L E M +GGG+G + S++RPR A V+ Sbjct: 84 FNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSF 143 Query: 202 XXLFSYTTGLIEQGGSRRGALMLMINDWHPDVVDFITVKQTMGQVTNANLSVCVSNSFMK 261 ++ I GSRRGA+M + HPD+ FI K+ ++ NLSV V+++FM+ Sbjct: 144 MDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKKDPARLRMFNLSVLVTDAFME 203 Query: 262 AVKEDLDWELVFPDTTDPDYDAVWDGDLDKWKADGRAVIPYRTVKARDVWHTIIESAWKS 321 AVK D WEL F YRT++ARD+W+ I+ S + Sbjct: 204 AVKADGPWELTFGGKV------------------------YRTLQARDLWNRIMRSTYDF 239 Query: 322 AEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPGWGVCNLSAVNLSKFYD---AENHD 378 AEPGV+F++ NQM+N Y I TNPCGEQ LP +G C L +VNL++ ++ + Sbjct: 240 AEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPYGACLLGSVNLARLVAKPFSDGAE 299 Query: 379 VDWADLATTTRYSVRFLDNVIDKTPYHFPENEANQRKERRVGLGTMGLAELMIKLNIRYG 438 +D A+L R +VR +DNV+D + + PE + +RR+GLG GLA+ ++ + +RYG Sbjct: 300 LDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYG 359 Query: 439 SPESLEFLDKLYGXXXXYGFMAREAYLASSEIAGEKGSFQAFDTEKYLLSGFMKNITETY 498 S E+ + +AR AYLAS+++A EKG+F F+ +KYL SG + ++ E Sbjct: 360 SEEAAARTEAWMKA------IARSAYLASADLAREKGAFPLFEADKYLGSGSLTHMDE-- 411 Query: 499 PEVGEAIRKNGMRNVTVITQAPXXXXXX-XXXXXXXIEPYFAFKYFRQ------SRLGYD 551 +V AIR +G+RN + + AP IEP FA+ Y R+ SR + Sbjct: 412 -DVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKVLQKDGSRT--E 468 Query: 552 EQFVPIA-QEWLEAHPGEELPDYFVTSMDLSAKDHIRAQAAIQRWVDSSISKTANCPSDF 610 E+ V A + W E LPDYFV + L+ +H+R QAA Q+W+DSSISKT NCP D Sbjct: 469 EEVVDYAVRLWREQMGDAPLPDYFVNAQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDI 528 Query: 611 TVEETAELYEMAFDLGCKGVTIYRDGSRDVQVLETSKKEDKKDXXXXXXXXXXXXXXXXX 670 EE A++Y A+D GCKG T YR VL S+ Sbjct: 529 GFEEFADVYLAAWDQGCKGCTTYRPNEVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDP 588 Query: 671 XXXXXXXXXXQGSAVDKQYKKRPQVLRGATYKINTPFG--MAYITINDL----DGIPAEI 724 RP L GATYK+ P YIT+ND+ P E+ Sbjct: 589 L-------------------DRPAALEGATYKVKWPGSEHALYITVNDIVISGHRRPFEV 629 Query: 725 FLNVGKAGSDVFAMAEALGRVCS-LFLRYGDHGEKVELLIKHLK 767 F+N + FA AL R+ S +F R GD VE L L+ Sbjct: 630 FIN--SKNMEHFAWTVALTRMISAVFRRGGDISFVVEELKAGLR 671 >gb|EAI86818.1| unknown [environmental sequence] Length = 791 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 264/811 (32%), Positives = 380/811 (46%), Gaps = 104/811 (12%) Query: 83 EKTPEEMWDRLASAMASVESTPELQEEWTGKFRSILDDWKLVPGGRIAAGAGASE-ELTL 141 EK P E+W R A A+ASVE TPELQ++W F L+++K VPGGRI GAG + TL Sbjct: 72 EKNPWELWKRQAKALASVEKTPELQDKWEAAFFEALENFKFVPGGRIMHGAGREDITTTL 131 Query: 142 FNCYVVPSPKDSRGGIMQTLSEMTEIMARGGGVGINLSSLRPRRAIVRXXXXXXXXXXXX 201 NCYVV DS I + + GGG G +LS LRP + Sbjct: 132 NNCYVVGIKDDSIKSIYDCVIQEAMTYKYGGGCGHDLSVLRPGGDEILGTGGNSCGPVGF 191 Query: 202 XXLFSYTTGLIEQGGSRRGALMLMINDWHPDVVDFITVKQ-TMGQVTNANLSVCVSNSFM 260 LFS T I Q G RRGA M + HPD+ FI +K + V +N+SV +++ FM Sbjct: 192 MNLFSENTNTIAQHG-RRGANMQTLRVDHPDIEKFIEIKTGDVDMVKYSNISVLLTDDFM 250 Query: 261 KAVKEDLDWELVFPDTTDPDYDAVWDGDLDKWKADGRAVIPYRTVKARDVWHTIIESAWK 320 AV+ +D D+D W G Y TVKA+++W IIE A Sbjct: 251 DAVQ------------SDSDFDLQWGGKT------------YTTVKAKELWMKIIEHAHA 286 Query: 321 SAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPGWGVCNLSAVNLSKFYDAENHDVD 380 SAEPG++F + + N+ Y +P++ TNPC EQ LP G CNL A+NL +F D ++ + D Sbjct: 287 SAEPGLLFWDTMTKYHNAEYCSPLVSTNPCAEQPLPDGGCCNLGALNLERFVD-QDGNFD 345 Query: 381 WADLATTTRYSVRFLDNVIDKT--PYHFPENEANQRKERRVGLGTMGLAELMIKLNIRYG 438 + TT RFLDNVID + E + N +RRVGLG +GL ++++K+ I+Y Sbjct: 346 FDGFKETTAIGARFLDNVIDYNLDRHALEEQKQNAMNDRRVGLGILGLGDMLVKMGIKYD 405 Query: 439 SPESLEFLDKLYGXXXXYGFMAREAYLASSEIAGEKGSFQAFDTEKYLLSGFMKNITETY 498 S E+LE + K+ AY S ++A EKG F FD + Y S F+K++ + Sbjct: 406 SDEALETIGKI------MEIHRNTAYETSVDLAKEKGQFPNFDWDGYSQSLFVKDLPK-- 457 Query: 499 PEVGEAIRKNGMRNVTVITQAPXXXXXXXXXXXXXIEPYFAFKYFRQSR----LGYD--- 551 ++ I+ NG+RN T+ T AP +EP FA Y R+ + LG + Sbjct: 458 -KLQTKIKNNGIRNCTLTTVAPTGSGAIVARVTSGVEPIFATSYQRKVKKNDSLGKEFDT 516 Query: 552 -EQFVPIAQEWLEAHPGEELPDYFVTSMDLSAKDHIRAQAAIQRWVDSSISKTANCPSDF 610 + P+ QE E LP+Y VT+ ++ ++ Q +QR++DSSIS T N + Sbjct: 517 FTVYHPVVQEMFGTD--ENLPEYVVTAHNVDPYFRVKMQGVVQRYIDSSISSTVNLAEET 574 Query: 611 TVEETAELYEMAFDLGCKGVTIYRDGSRDVQVLETSKKEDKKDXXXXXXXXXXXXXXXXX 670 TVE A++Y A+ KG+T+YR+GSR+ ++ K + KD Sbjct: 575 TVETVADIYMTAYKADLKGITVYREGSREGILITDEKSSENKDETSKNVEM--------- 625 Query: 671 XXXXXXXXXXQGSAVDKQYKKRPQVLRGATYKINTPFGMAYITINDLDGIPAEIFLNVGK 730 K + RP + G T ++ T G Y+T+N+ + E+F +GK Sbjct: 626 ----------------KTARNRPSITEGKTRRMRTGDGTLYVTVNEDENGLCEVFTAIGK 669 Query: 731 AGSDVFAMAEALGRVCSLFLRYGDHGEKVELLIKHLKXXXXXXXXXXXXNRVESIADAVA 790 AG V A EA+ R+ SL LR G + I LK + S DA+ Sbjct: 670 AGGTVAAQTEAISRLISLALRSGVDPNSI---INQLKGISGPNPTWEDGQLILSTPDAIG 726 Query: 791 KALETHVLNNAHDDHVPAPIAATLELDFNEALSAELKSSVPAAAXXXXXXXXXXXXXXXX 850 +ALET V ++ S E KS A Sbjct: 727 RALETFV--------------------NGDSPSQEKKSQFEIAEENPTRGNAGEYGQH-- 764 Query: 851 XXRDLCPSCGSASLINIEGCKTCSNCGYSRC 881 C C + ++N GC C +CG+S+C Sbjct: 765 -----CSECDGSGIVNEGGCLVCKDCGWSKC 790 >gb|EAK54058.1| unknown [environmental sequence] Length = 726 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 253/730 (34%), Positives = 366/730 (50%), Gaps = 79/730 (10%) Query: 83 EKTPEEMWDRLASAMASVESTPELQEEWTGKFRSILDDWKLVPGGRIAAGAGASE-ELTL 141 EK P ++W R A+A+ASVE T Q+ W KF SIL+D+K VPGGRI GAG + TL Sbjct: 61 EKHPFQLWKRQATALASVEKTKASQKNWEEKFFSILEDFKFVPGGRIMHGAGREDITTTL 120 Query: 142 FNCYVVPSPKDSRGGIMQTLSEMTEIMARGGGVGINLSSLRPRRAIVRXXXXXXXXXXXX 201 NCYVV DS I T+ GGG G +LS LRP + Sbjct: 121 NNCYVVAVRDDSIKSIYDTIINEALTYKYGGGCGHDLSVLRPAGKAINGTGGESCGPTGF 180 Query: 202 XXLFSYTTGLIEQGGSRRGALMLMINDWHPDVVDFITVKQ-TMGQVTNANLSVCVSNSFM 260 LFS T I Q G RRGA M + HPD+ FI++K + V +N+SV +++ FM Sbjct: 181 MNLFSENTNTIAQHG-RRGANMQTLRIDHPDIQKFISIKTGDIDMVKYSNISVLLTHEFM 239 Query: 261 KAVKEDLDWELVFPDTTDPDYDAVWDGDLDKWKADGRAVIPYRTVKARDVWHTIIESAWK 320 +AVKED D+D +D D+ Y TVKA+ +W II+ A Sbjct: 240 EAVKED------------KDFDLHYDNDV------------YETVKAKALWDKIIKHAHA 275 Query: 321 SAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPGWGVCNLSAVNLSKFYDAENHDVD 380 SAEPG++F + N+ Y +P++ TNPC EQ LP G CNL AVNL KF D +N + Sbjct: 276 SAEPGLLFWDTMKDYHNAEYCSPLVSTNPCAEQPLPDGGCCNLGAVNLEKFVD-DNGNFM 334 Query: 381 WADLATTTRYSVRFLDNVIDKT--PYHFPENEANQRKERRVGLGTMGLAELMIKLNIRYG 438 D T RFLDNV+D + + + N +RRVGLG +GL +++++L I+Y Sbjct: 335 IDDFKETVAIGTRFLDNVVDYNMDRHALEDQKQNAMNDRRVGLGILGLGDMLVRLGIQYD 394 Query: 439 SPESLEFLDKLYGXXXXYGFMAREAYLASSEIAGEKGSFQAFDTEKYLLSGFMKNITETY 498 S ++L+ +D++ Y S +A EKG + FD Y S F+KN+ ++ Sbjct: 395 SEDALQTVDQI------MQIFRDTTYETSVNLAIEKGKYPNFDWSGYSKSKFVKNLPKS- 447 Query: 499 PEVGEAIRKNGMRNVTVITQAPXXXXXXXXXXXXXIEPYFAFKYFRQSRL--GYDEQFVP 556 + I+K+G+RN T+ T AP +EP FA Y R+ + GY + F Sbjct: 448 --LQGKIKKHGIRNCTLTTVAPTGSGAIVSRVTSGVEPIFATSYKRRVKENDGYGKTF-- 503 Query: 557 IAQEWLEAHP--------GEELPDYFVTSMDLSAKDHIRAQAAIQRWVDSSISKTANCPS 608 +E+ HP E+LP+Y VTS ++ +R Q IQ+++DSSIS T N P Sbjct: 504 --KEYTVYHPIIEKLFGTDEDLPEYVVTSHNIDPYFRVRMQGTIQKYIDSSISSTVNLPE 561 Query: 609 DFTVEETAELYEMAFDLGCKGVTIYRDGSRDVQVLETSKKEDKKDXXXXXXXXXXXXXXX 668 + TV+ A++Y A+ G KG+T+YR+GSR+ +L T +E + Sbjct: 562 EITVDTIADIYMTAYQAGLKGITVYREGSRE-GILVTDTEEQNNEVNDLDLE-------- 612 Query: 669 XXXXXXXXXXXXQGSAVDKQYKKRPQVLRGATYKINTPFGMAYITINDLDGIPAEIFLNV 728 +AV+K + RP G T +I T G YITIN+ + E+F + Sbjct: 613 --------------TAVEKSPRSRPTQTSGVTRRIRTGEGTLYITINEDENGLCEVFTTI 658 Query: 729 GKAGSDVFAMAEALGRVCSLFLRYGDHGEKVELLIKHLKXXXXXXXXXXXXNRVESIADA 788 GKAG + A +EA+ R+ SL LR G +++ LK + S DA Sbjct: 659 GKAGGNAAAQSEAISRLISLSLR---SGLDPHAIVRQLKGISGPNPTWEDGRLILSTPDA 715 Query: 789 VAKALETHVL 798 + KAL+ +++ Sbjct: 716 IGKALDDYLI 725 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,173,021,844 Number of extensions: 45478684 Number of successful extensions: 117402 Number of sequences better than 1.0e-05: 867 Number of HSP's gapped: 115371 Number of HSP's successfully gapped: 958 Length of query: 882 Length of database: 757,237,578 Length adjustment: 135 Effective length of query: 747 Effective length of database: 390,699,213 Effective search space: 291852312111 Effective search space used: 291852312111 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)