BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0004.p
         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_639736.1| probable transposase [Streptomyces coelicolor A...   118   7e-26
ref|NP_822379.1| putative IS630 family transposase [Streptomyces...   117   2e-25
ref|NP_628515.1| putative transposase [Streptomyces coelicolor A...   116   3e-25
ref|NP_615798.1| predicted protein [Methanosarcina acetivorans s...    61   2e-08

>ref|NP_639736.1| probable transposase [Streptomyces coelicolor A3(2)]
 emb|CAC36684.1| probable transposase [Streptomyces coelicolor A3(2)]
          Length = 374

 Score =  118 bits (296), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 6/164 (3%)

Query: 6   IFVRDLTQEEGNRLKRIARKGA-DPVQVRRALLILASAQKMKVPEISRLYHISGEHIRHT 64
           + VR LT +EG +L++I R+G+   V+ RRA+++LASA   +VP I++L     + +R  
Sbjct: 6   VRVRRLTDQEGPKLQQIVRRGSTSTVRFRRAMMLLASAGGNRVPVIAKLVQADEDTVRDV 65

Query: 65  IHRFNQEGLPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVE 124
           IHRFN+ GL  L P++ G RP   + ++   +I+ A   P   G PFT WS+ KL  A  
Sbjct: 66  IHRFNEIGLACLDPQWAGDRPRLLSDDDEDFVIQTATTRPTKLGQPFTRWSIRKL--AAY 123

Query: 125 ERKI---VSSISIEMLRVILGEAKITYQNTKTWKDLNDPDFESK 165
            R++   V  I  E LR +L    IT+Q TKTWK+  DPD ++K
Sbjct: 124 LRRVDGRVFRIGREALRCLLARRGITFQRTKTWKESPDPDRDAK 167


>ref|NP_822379.1| putative IS630 family transposase [Streptomyces avermitilis
           MA-4680]
 dbj|BAC68914.1| putative IS630 family transposase [Streptomyces avermitilis
           MA-4680]
          Length = 373

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 6/164 (3%)

Query: 6   IFVRDLTQEEGNRLKRIARKGA-DPVQVRRALLILASAQKMKVPEISRLYHISGEHIRHT 64
           + VR LT  EG +L++I  +G+   V+ RRA+++LASA   +VP I++L     + +R  
Sbjct: 5   VRVRRLTDHEGQKLQQIVHRGSTSSVRYRRAMMLLASAGGKRVPVIAQLVQADEDTVRDV 64

Query: 65  IHRFNQEGLPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVE 124
           IH FN++GL  L P++ GGRP     +E   +++ A   P   G PFT WSL KL   + 
Sbjct: 65  IHAFNEKGLACLDPRWAGGRPRQLKSDEEDFVVQTATTCPVKLGQPFTRWSLRKLVAYL- 123

Query: 125 ERKI---VSSISIEMLRVILGEAKITYQNTKTWKDLNDPDFESK 165
            RK+   V  I  E LR +L    +T+Q TKTWK+  DP+ E+K
Sbjct: 124 -RKVHGRVIRIGREALRCLLARRGVTFQRTKTWKESPDPERETK 166


>ref|NP_628515.1| putative transposase [Streptomyces coelicolor A3(2)]
 emb|CAB93418.1| putative transposase [Streptomyces coelicolor A3(2)]
          Length = 281

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 6/164 (3%)

Query: 6   IFVRDLTQEEGNRLKRIARKGA-DPVQVRRALLILASAQKMKVPEISRLYHISGEHIRHT 64
           + VR LT +EG  L++I R+G+ + V+ RR++++L+SA    VP I++L     + +R+ 
Sbjct: 6   VHVRRLTDQEGYELQQIVRRGSTNSVRYRRSMMVLSSAGGNGVPVIAKLVQADEDTVRNV 65

Query: 65  IHRFNQEGLPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVE 124
           IHRFN+ GL  L P++ GGRP   + ++   ++  A   P   G PFT WS+ KL  A  
Sbjct: 66  IHRFNEIGLACLDPRWAGGRPRLLSGDDGDYVVATATTRPARLGQPFTRWSIRKL--AAY 123

Query: 125 ERKI---VSSISIEMLRVILGEAKITYQNTKTWKDLNDPDFESK 165
            R++   V  I  E LR +L    IT+Q TKTWK+  DP+ ++K
Sbjct: 124 LRRVHGHVIKIGREALRCLLARRGITFQRTKTWKESPDPERDAK 167


>ref|NP_615798.1| predicted protein [Methanosarcina acetivorans str. C2A]
 gb|AAM04278.1| predicted protein [Methanosarcina acetivorans str. C2A]
          Length = 159

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 11  LTQEEGNRLKRIARKGADPVQ-VRRALLILASAQKMKVPEISRLYHISGEHIRHTIHRFN 69
           LT EE   L++++   ++P   V+RA ++L S + +   EISR  +++   +R  I R  
Sbjct: 12  LTHEEIKYLEKLSHSRSEPASLVQRAKIVLLSFEGINDTEISRQLNVAYNTVRSRIQRVL 71

Query: 70  QEG-LPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVEERKI 128
             G +  LK K   GRP T T E R  +I++A + PK  GYP   W+   L + V+E  I
Sbjct: 72  DFGVIEGLKDKTGAGRPRTITDESRVWLIKVACMKPKDFGYPHEIWTQRLLTKYVQENCI 131


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 303,992,796
Number of extensions: 12341208
Number of successful extensions: 32200
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 32207
Number of HSP's successfully gapped: 10
Length of query: 195
Length of database: 757,237,578
Length adjustment: 119
Effective length of query: 76
Effective length of database: 434,140,797
Effective search space: 32994700572
Effective search space used: 32994700572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 122 (51.6 bits)