BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0003.p
         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_639736.1| probable transposase [Streptomyces coelicolor A...    80   1e-14
ref|NP_822379.1| putative IS630 family transposase [Streptomyces...    77   1e-13
ref|NP_631816.1| hypothetical protein [Streptomyces coelicolor A...    62   5e-09

>ref|NP_639736.1| probable transposase [Streptomyces coelicolor A3(2)]
 emb|CAC36684.1| probable transposase [Streptomyces coelicolor A3(2)]
          Length = 374

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 43/73 (58%)

Query: 2   KEWAAANNVEFVYTPTYASWLNRIECHFGPLRKFVLEGSDFAKHQDLGLAIQAYLRWRNK 61
           + WA  N VE  +TPTYASW N I  HFGPLR+F +  S    H     A+ AYLRWRNK
Sbjct: 280 RAWATKNRVELCFTPTYASWANPIAAHFGPLRQFTVANSHHRSHPTQTRALHAYLRWRNK 339

Query: 62  NKRKAIILREQNK 74
           N R   +L  Q K
Sbjct: 340 NARHPEVLAAQRK 352


>ref|NP_822379.1| putative IS630 family transposase [Streptomyces avermitilis
           MA-4680]
 dbj|BAC68914.1| putative IS630 family transposase [Streptomyces avermitilis
           MA-4680]
          Length = 373

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 44/74 (59%)

Query: 1   VKEWAAANNVEFVYTPTYASWLNRIECHFGPLRKFVLEGSDFAKHQDLGLAIQAYLRWRN 60
           ++ WA  + VE  +TPTYASW N IE HFGPLR+F +  S    H     A+ +YLRWRN
Sbjct: 278 IRRWAKKHKVELCFTPTYASWANPIEAHFGPLRQFTIANSHHPNHTVQTRALHSYLRWRN 337

Query: 61  KNKRKAIILREQNK 74
            N R   +L  + K
Sbjct: 338 ANARHCDVLAAERK 351


>ref|NP_631816.1| hypothetical protein [Streptomyces coelicolor A3(2)]
 emb|CAC14514.1| hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 195

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 1   VKEWAAANNVEFVYTPTYASWLNRIECHFGPLRKFVLEGSDFAKHQDLGLAIQAYLRWRN 60
           V + A A+NVE  YTPT ++ LNRIE  F   R F L+G+D   H++ G  I+ Y+ WRN
Sbjct: 118 VGDRATASNVEIAYTPTNSARLNRIEAQFAAPRYFTLDGTDHTTHKEQGSMIRRYVIWRN 177

Query: 61  KN 62
           ++
Sbjct: 178 RH 179


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 126,047,038
Number of extensions: 4227870
Number of successful extensions: 7853
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7855
Number of HSP's successfully gapped: 3
Length of query: 78
Length of database: 757,237,578
Length adjustment: 48
Effective length of query: 30
Effective length of database: 626,912,826
Effective search space: 18807384780
Effective search space used: 18807384780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)