BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0085.p
         (1048 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00044107.1| COG2202: FOG: PAS/PAC domain [Magnetococcus s...   360   9e-98
ref|ZP_00043158.1| COG2202: FOG: PAS/PAC domain [Magnetococcus s...   359   2e-97
ref|NP_953363.1| sensory box histidine kinase/response regulator...   332   3e-89
ref|ZP_00054895.1| COG0642: Signal transduction histidine kinase...   331   5e-89
ref|NP_936064.1| signal transduction histidine kinase [Vibrio vu...   298   5e-79

>ref|ZP_00044107.1| COG2202: FOG: PAS/PAC domain [Magnetococcus sp. MC-1]
          Length = 1134

 Score =  360 bits (924), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 266/841 (31%), Positives = 425/841 (50%), Gaps = 98/841 (11%)

Query: 246  SRKQNEEALAAAQRVAKIGSWVWDLSKGRLVFSEELQRMLHY-STGTDVKYETFLSLVHP 304
            S K++++AL  AQ +A++G+W W +    L +++E+ R+       T   Y+ FLS +HP
Sbjct: 350  SLKESQKALLEAQNIAQVGNWTWTIETNTLSWTDEIYRIFGLIPQETPPTYQAFLSAIHP 409

Query: 305  DDLELLKAGVERAVKKGESG-ESSYRLVLPDATLLTVNIQWDVTRGPTGKPVQLIGMMQD 363
            +D   ++  V +A+++  +  +  +R++ P+  L TV     V R   G P ++IG +QD
Sbjct: 410  EDRLFVQNAVNQALEQLNTPYQVEHRIIRPNGDLRTVVELGRVERDQQGTPFRMIGTVQD 469

Query: 364  ITERRQMEQQLRESEQRYKSLFEY--NPSAVYSMNLNG-----DY--LSANANLEELTGY 414
            IT R+Q E  L  SE R++SLF+      A+++M  N      DY  L  N    E+ G 
Sbjct: 470  ITARKQTEALLLSSEIRFRSLFDSMNEGGALHAMVFNEHGNPIDYRILEVNKAYTEILGI 529

Query: 415  TLDELIGMYFGPIVHEKDIEKTLHHFKLASQGEPQSYDL-TLIHKDGHLVEINTLNIPII 473
            T ++  G     I                 Q  P   +L   + K G  +   T   P++
Sbjct: 530  TKEQAEGRLATEIY---------------GQTSPPYLELYNRVVKTGQSLRFETEYSPMV 574

Query: 474  VDKQVVGVYG--------ISRDITERIRYTE-------QIEKLSNEYTLILNAVSEGIFG 518
             + ++  V+         +  DITER +  +       ++EK SN    ++  + + I+ 
Sbjct: 575  RNFEI-SVFSPGENQFATVFTDITERKKTLQKLNGALDELEKKSNFLQSLVQNLPDLIWM 633

Query: 519  LDTEGRITFINPAGAHMLGFEQDEIMGRSYLNHIGQTASDAVHYRMEASPLIRVIQAGES 578
             D EG     NPA    +G ++ +I G++  + + Q  +D   +RM     +  I+ G  
Sbjct: 634  KDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFVDQKLAD--FFRMND---LLAIEKGGP 688

Query: 579  QRSMDAVLWRKDGSSFLAEYQATPLFDK-GERKGAVVVFRDITN----EQEIIRAKESAE 633
              + + V +  DG   L E   TP+FDK G   G + V  DIT     EQ++I AKE AE
Sbjct: 689  VINQEWVTFAADGHKALLETTKTPMFDKQGRIIGVLGVAHDITATKQAEQDLIHAKEKAE 748

Query: 634  KADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEXXXXXXXXXXXXXNE 693
             A QAKSEFLA MSHE+RTPMN IIG++D+L ET ++ EQR +               + 
Sbjct: 749  AAYQAKSEFLATMSHEIRTPMNVIIGLSDILMETPIDHEQRDHLLRLQKANKTLLDLVDS 808

Query: 694  ILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSRIAEDVPELI-MGDA 752
            ILD S+IEA +++L  EP+++  ++     + S  A +K + L S++ +   +   +GD 
Sbjct: 809  ILDLSRIEANQISLKQEPLNLALMVEETMSMMSIVADQKGLRLESQVTQATDDYWSLGDE 868

Query: 753  DRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAKKLSLKFSVHDTGIGIPSEKQPQLF 812
             R+RQ+LVNL+ NAVKFTE+G + + +E  F    ++  ++  V DTGIGI  E    +F
Sbjct: 869  SRIRQILVNLIGNAVKFTEKGSIWVTLEL-FTDTLERTLVRLCVKDTGIGIGPEHLETIF 927

Query: 813  QSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVESVEGKGSKFFFTL---PVDPGG 869
              F+Q+  S  R+Y GTGLGLAI +R+++LMGG + VES   +GS F   L   PV P  
Sbjct: 928  DKFTQVDSSYARRYSGTGLGLAITRRIIQLMGGKVWVESNPSQGSLFCVELPFIPVQPIA 987

Query: 870  EWEENGAEDHELAEVLYTPDSGENTAAYAGRKXXXXXXXXXXXXXXXXXEAKYGPLRILV 929
              E+   ++          D   +T                             PLRIL+
Sbjct: 988  LKEDTTLQN----------DVNRSTNR---------------------------PLRILL 1010

Query: 930  AEDHPVNQRLILTMLEKRGYKADLAENGQQALQAVLRQPYDLVFMDVQMPVMSGLTAAAG 989
            AED   NQ L+ T L +  ++  +  +GQQA+ A   +P+DL+ MD+QMP+M G  A   
Sbjct: 1011 AEDSEDNQMLVQTYLRRTHHELVIVMDGQQAVDAACSKPFDLILMDIQMPIMDGYQATGI 1070

Query: 990  IREQAPLNHQPF--IVAVTAYARPEDRERCLAVGMEDFVSKPFLSSDIERILRERMEKIS 1047
            IR+    +++P   I+A+TA+A  ED  + LA G +  ++KP   +   + + ER + I+
Sbjct: 1071 IRDDQHRHNKPHTPILALTAHALDEDVAKSLAAGCDGHLTKPIRKAKFLQCI-ERYQPIT 1129

Query: 1048 L 1048
             
Sbjct: 1130 F 1130


>ref|ZP_00043158.1| COG2202: FOG: PAS/PAC domain [Magnetococcus sp. MC-1]
          Length = 1100

 Score =  359 bits (922), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 271/836 (32%), Positives = 422/836 (50%), Gaps = 73/836 (8%)

Query: 231  NNEIVRIMGIGRNVTSRKQ-NEEALAAAQRVAKIGSWVWDLSKGRLVFSEELQRMLHYST 289
            N E+ R +   +    R Q +EE  A A R +  G W WD+   R+ FS     ML Y  
Sbjct: 310  NRELQRSIAAQQQAEQRLQRSEERFALAMRGSNDGLWDWDIPTDRVTFSPRWLEMLGYQG 369

Query: 290  G-TDVKYETFLSLVHPDDLELLKAGVERAVKKGESGE-----SSYRLVLPDATLLTVNIQ 343
               D     + + +HPDD    +  VE+A+ +  SG+     S YR+   D   + V  +
Sbjct: 370  APQDADMRHWQAHIHPDD----QPRVEQALGRFLSGDQQHYHSEYRMRHKDGHTIAVLSR 425

Query: 344  WDVTRGPTGKPVQLIGMMQDITERRQMEQQLRESEQRYKSLFEYNPSAVYSMNLNGDYLS 403
              V R  TG+ ++++G   DIT  ++  ++LRESE R+++ FE +   +   +L+  ++ 
Sbjct: 426  AFVLRDATGRAIRMVGTHADITALKEQARRLRESETRFRAYFEQSVVGMVMASLDRHFID 485

Query: 404  ANANLEELTGYTLDELIGMYFGPIVHEKDIEKTLHHFKLASQGEPQSYDL--TLIHKDGH 461
            AN     + GY+  EL+ M F  I +  D+E+ L  F+    G+  ++++    +H+DGH
Sbjct: 486  ANHAFCHMLGYSRGELLKMNFPQITYPDDLERDLVQFEQLRSGQVSAFEMEKRYLHRDGH 545

Query: 462  LVEINTLNIPIIVDKQVVGVYGISRDITERIRYTEQIEKLSNEYTLILNAVSEGIFGLDT 521
             V    L+   + D+     Y I++ +       + +E+L    +++      G+ G+ T
Sbjct: 546  PV-WGLLSATTVKDELGQASYLIAQ-VQNIDTQKKALEQLRQSESMMRGYFELGLIGMAT 603

Query: 522  ----EGRITFINPAGAHMLGFEQDEIMGRSY--LNHIGQTASDAVHYRMEASPLIRVIQA 575
                 G +  IN     +LG+ +  +  +S+  + H     +D V         I  ++ 
Sbjct: 604  TTAQHGWVQ-INQRLCEILGYPEMALRQKSWAEITHPQDRQADEV--------AIERLRK 654

Query: 576  GESQ-RSMDAVLWRKDGSSFLAEYQATPLFDKGERKGA-VVVFRDITNEQEIIRA----K 629
            G S+  +++    R+DG+   A   A  L  +G   G  + + +DIT  + +  A    K
Sbjct: 655  GLSEGYALEKRFIRQDGAFIYASISAGCLRKEGGEIGHFLTLVQDITARKRMELALQEQK 714

Query: 630  ESAEKADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEXXXXXXXXXXX 689
            E AE A++AKS FLAVMSHE+RTPMN I+GM +LL E+DL   Q    E           
Sbjct: 715  EQAEAANRAKSTFLAVMSHEIRTPMNAILGMAELLRESDLTSRQHWCVETLNRSGESLLS 774

Query: 690  XXNEILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSRIAEDVPELIM 749
              N+ILD SKIEA ++TL H    +  ++G V  LF  +A+ K + L   IA  +P  ++
Sbjct: 775  LINDILDLSKIEAERLTLEHVVFDLVQLVGDVCSLFGYEAQSKGLALKHHIAPTLPRYVV 834

Query: 750  GDADRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAKKLSLKFSVHDTGIGIPSEKQP 809
            GD  RLRQ+++NLV NAVKFT++G VS+    E  P A    L F + DTGIG+  E+Q 
Sbjct: 835  GDPIRLRQIMMNLVGNAVKFTKQGHVSV----ELNPLADG-RLSFVIRDTGIGVSVEQQR 889

Query: 810  QLFQSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVESVEGKGSKFFF--TLPVDP 867
             +F+ F+Q   SI R++GGTGLGL IC RLV LMGG + +ES  G+GS F F   LP  P
Sbjct: 890  NIFKPFTQADSSITREHGGTGLGLTICMRLVALMGGEMQLESTLGEGSCFHFELELPAAP 949

Query: 868  GGEWEENGAEDHELAEVLYTPDSGENTAAYAGRKXXXXXXXXXXXXXXXXXEAKYGPLRI 927
                   GAE      V+ TP +  + A+                       A +    I
Sbjct: 950  ------PGAES-----VVGTPRTLADVAS-----------------ALRLESAAHHNDPI 981

Query: 928  LVAEDHPVNQRLILTMLEKRGYKADLAENGQQALQAVLRQPYDLVFMDVQMPVMSGLTAA 987
            LV +D   N+ L+   L+K  Y   +AENG +A+ A  +QP+ LV MD+QMP+M G  A 
Sbjct: 982  LVVDDAEDNRMLVNVFLKKTRYTLVMAENGLEAVNAFKQQPFALVLMDIQMPLMDGYEAT 1041

Query: 988  AGIR--EQAPLNHQPFIVAVTAYARPEDRERCLAVGMEDFVSKPFLSSDIERILRE 1041
              IR  EQ   + +  I+A+TA+A  E+ ++ L  G +  ++KP   S +  +L E
Sbjct: 1042 RQIRQWEQQKGSGRTPIIALTAHALSEESQQILEAGCDIHLTKPIRKSKLLEVLAE 1097



 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 154/361 (42%), Gaps = 22/361 (6%)

Query: 122 ITDRKIADQLTVDSRDLYDLFIK-DDQTMISFTLPDGTLSFISPSSQLQIGF--APEEIV 178
           I  ++ A+Q    S + + L ++  +  +  + +P   ++F SP     +G+  AP++  
Sbjct: 317 IAAQQQAEQRLQRSEERFALAMRGSNDGLWDWDIPTDRVTF-SPRWLEMLGYQGAPQDAD 375

Query: 179 GRNRLEFYHPDDVEGMDQSQGLLESKTYIR-----RLRHKDGHYLWFETSFHVIHDENNE 233
            R+     HPDD   ++Q+ G   S          R+RHKDGH +   +   V+ D    
Sbjct: 376 MRHWQAHIHPDDQPRVEQALGRFLSGDQQHYHSEYRMRHKDGHTIAVLSRAFVLRDATGR 435

Query: 234 IVRIMGIGRNVTSRKQNEEALAAAQRVAK-------IGSWVWDLSKGRLVFSEELQRMLH 286
            +R++G   ++T+ K+    L  ++   +       +G  +  L +  +  +     ML 
Sbjct: 436 AIRMVGTHADITALKEQARRLRESETRFRAYFEQSVVGMVMASLDRHFIDANHAFCHMLG 495

Query: 287 YSTGTDVKYETFLSLVHPDDLELLKAGVERAVKKGE--SGESSYRLVLPDATLLTVNIQW 344
           YS G  +K   F  + +PDDLE      E+ ++ G+  + E   R +  D   +   +  
Sbjct: 496 YSRGELLKM-NFPQITYPDDLERDLVQFEQ-LRSGQVSAFEMEKRYLHRDGHPVWGLLSA 553

Query: 345 DVTRGPTGKPVQLIGMMQDITERRQMEQQLRESEQRYKSLFEYNPSAVYSMNLNGDYLSA 404
              +   G+   LI  +Q+I  +++  +QLR+SE   +  FE     + +      ++  
Sbjct: 554 TTVKDELGQASYLIAQVQNIDTQKKALEQLRQSESMMRGYFELGLIGMATTTAQHGWVQI 613

Query: 405 NANLEELTGYTLDELIGMYFGPIVHEKDIEKTLHHFKLASQGEPQSYDL--TLIHKDGHL 462
           N  L E+ GY    L    +  I H +D +      +   +G  + Y L    I +DG  
Sbjct: 614 NQRLCEILGYPEMALRQKSWAEITHPQDRQADEVAIERLRKGLSEGYALEKRFIRQDGAF 673

Query: 463 V 463
           +
Sbjct: 674 I 674



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 16/251 (6%)

Query: 13  FLMSPLGTGVLSQEGKWLKVNPAFCHTLGCSEQEFLAGGLLHNTVAQQEGIQQIDINLL- 71
           F  S +G  + S +  ++  N AFCH LG S      G LL     Q      ++ +L+ 
Sbjct: 467 FEQSVVGMVMASLDRHFIDANHAFCHMLGYSR-----GELLKMNFPQITYPDDLERDLVQ 521

Query: 72  IGELASSPERSLVKEKKFLTRSGRTVWLLL--TFVKAAAGQACSHIIVYAEDI-TDRKIA 128
             +L S    +   EK++L R G  VW LL  T VK   GQA S++I   ++I T +K  
Sbjct: 522 FEQLRSGQVSAFEMEKRYLHRDGHPVWGLLSATTVKDELGQA-SYLIAQVQNIDTQKKAL 580

Query: 129 DQLTVDSRDLYDLFIKDDQTMISFTLPDGTLSFISPSSQLQIGFAPEEIVGRNRLEFYHP 188
           +QL      +   F      M + T   G +       ++ +G+    +  ++  E  HP
Sbjct: 581 EQLRQSESMMRGYFELGLIGMATTTAQHGWVQINQRLCEI-LGYPEMALRQKSWAEITHP 639

Query: 189 DDVEGMDQS-----QGLLESKTYIRRLRHKDGHYLWFETSFHVIHDENNEIVRIMGIGRN 243
            D +  + +     +GL E     +R   +DG +++   S   +  E  EI   + + ++
Sbjct: 640 QDRQADEVAIERLRKGLSEGYALEKRFIRQDGAFIYASISAGCLRKEGGEIGHFLTLVQD 699

Query: 244 VTSRKQNEEAL 254
           +T+RK+ E AL
Sbjct: 700 ITARKRMELAL 710


>ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter
            sulfurreducens PCA]
 gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter
            sulfurreducens PCA]
          Length = 982

 Score =  332 bits (851), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 232/680 (34%), Positives = 352/680 (51%), Gaps = 59/680 (8%)

Query: 371  EQQLRESEQRYKSLFEYNPSAVYSMNLNGDYLSANANLEELTGYTLDELIGM-YFGPIVH 429
            + +L ESE+R + L E     +  ++  G     NA   +L GY  +EL G+     + H
Sbjct: 210  QARLAESEERNRLLSEVALEGIV-IHDRGIVQDMNARFAKLFGYPREELEGINVISLLFH 268

Query: 430  EKDIEKTLHHFKLASQGEPQSYDLTLIHKDGHLVEINTLNIPIIVDKQVVGVYGISRDIT 489
              DI   +      S+   + Y +  + KDG + ++      +    + V V  + RDIT
Sbjct: 269  PDDIGSMIDKM---SRAHSEPYQVRGVKKDGTVFDVEIEGYNLQHGDKSVRVVSV-RDIT 324

Query: 490  ERIRYTEQIEKLSNEYTLILNAVSEGIFGLD-TEGRITFINPAGAHMLGFEQDEIMGRSY 548
            ER R  E + +    +  +    +     +D   G I   N A     G+ ++++   + 
Sbjct: 325  ERRRAEEALRQSEALFRNLFEHHAAVKLIIDPVSGAIVDANNAAVSFYGWSREQLRAMN- 383

Query: 549  LNHIGQTASDAVHYRMEASP-------LIRVIQAGESQRSMDAVLWRKDGSSFLAEYQAT 601
            +  I   + + +   +E +          R  +A +S R ++    R +      EY  +
Sbjct: 384  IRDINMLSPEELVSELENTKNMERIHFFFRHRRADDSVRDVEVFSSRIEVKG--REYLHS 441

Query: 602  PLFDKGERKGAVVVFRDITNEQEIIRAKESAEKADQAKSEFLAVMSHELRTPMNGIIGMT 661
             + D  ERK A         E+E++ AKE AE A++AKSEFLA MSHE+RTPMNG+IGMT
Sbjct: 442  IVHDVTERKRA---------EEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVIGMT 492

Query: 662  DLLAETDLNEEQRGYAEXXXXXXXXXXXXXNEILDFSKIEAGKMTLMHEPVSVESVMGIV 721
             LL ET L +EQR YAE             ++ILDFSKIEAG++ +      + +++  +
Sbjct: 493  GLLLETGLADEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDLRTLLDDL 552

Query: 722  TELFSPKAKEKNILLSSRIAEDVPELIMGDADRLRQVLVNLVSNAVKFTEEGQVSIGVET 781
             E  + KA EK +  +  +  +VP  +MGD  RL+QVLVNL  NA+KFT +G++S+ V +
Sbjct: 553  AESLAFKANEKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQGEISVEVGS 612

Query: 782  EFCPNAKKLSLKFSVHDTGIGIPSEKQPQLFQSFSQLHPSINRKYGGTGLGLAICKRLVE 841
                    + L+F+V DTGIGIP EK   LF+ F+Q   SI RKYGGTGLGLAICKRLV+
Sbjct: 613  -LTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQ 671

Query: 842  LMGGAIGVESVEGKGSKFFFTLPVDPGGEWEENGAEDHELAEVLYTPDSGENTAAYAGRK 901
            +MGG IGV S  G GS+F+FT            G ++  L +    PD G+         
Sbjct: 672  MMGGEIGVTSRPGVGSEFWFTASF---------GTQN--LRDSSPEPDGGDGP------- 713

Query: 902  XXXXXXXXXXXXXXXXXEAKYGPLRILVAEDHPVNQRLILTMLEKRGYKADLAENGQQAL 961
                             +  +  +RIL+ ED+  N+++ L ++++ G + D A NG +AL
Sbjct: 714  ------------LQLLSDLGHDDVRILLVEDNATNRQVALGIIKRLGLRGDAAANGAEAL 761

Query: 962  QAVLRQPYDLVFMDVQMPVMSGLTAAAGIRE-QAP-LNHQPFIVAVTAYARPEDRERCLA 1019
              +   PYDLV MDVQMPVM G  A   IR+ ++P LNH+  ++A+TA+A   DR +CL 
Sbjct: 762  DLLATTPYDLVLMDVQMPVMDGFEATRHIRDVRSPVLNHEIPVIALTAHAMKGDRRKCLD 821

Query: 1020 VGMEDFVSKPFLSSDIERIL 1039
             GM D+++KP     +  +L
Sbjct: 822  AGMNDYLAKPIFPDALAEML 841


>ref|ZP_00054895.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum]
          Length = 1043

 Score =  331 bits (849), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 227/662 (34%), Positives = 334/662 (50%), Gaps = 89/662 (13%)

Query: 350 PTGKPVQLIGMMQDITERRQMEQQLRESEQRYKSLFEYNPSAVYSMNLNGDYLSANANLE 409
           PTG   Q + +M+DI+ER+++E+++ ESE+R++   +      + M  +  +   +    
Sbjct: 111 PTGS-AQFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFSGQFT 169

Query: 410 ELT--------GYTLDELIGMYFGPIVHEKDIEKTLHHFKLASQGEPQS---YDLTLIHK 458
           E T        G+T DE+I         +  +E  L +        P     Y    +  
Sbjct: 170 EHTRALPSHYVGHTRDEMIS-------DDTPMEARLQNLADMEARRPFRDFVYHTKNMDG 222

Query: 459 DGHLVEINTLNIPII-VDKQVVGVYGISRDITERIRYTE-------QIEKLSNEYTLILN 510
            G  + +N    P+     +  G  G + DITE I   +       +IE+L+     IL 
Sbjct: 223 PGRFLRVN--GKPVFDPSGEFKGYRGTASDITEEIEAADRLKASQAEIERLAERNNSILE 280

Query: 511 AVSEGIFGLDTEGRITFINPAGAHMLGFEQDEIMGRSYLNHIGQTASDAVHYRMEASPLI 570
           +V +GI G+D  GR TF+N A A +L FE  E++G   L  +      A+      S   
Sbjct: 281 SVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSDILPLM------ALDMETAESLYQ 334

Query: 571 RVIQAGESQRSMDAVLWRKDGSSFLAEYQATPLFDKGERKGAVVVFRDITN----EQEII 626
            +++  +S R   A   R+DGS    EY A+P+ DKG + G V+ FRDIT     E+++ 
Sbjct: 335 ILLRLADSIRDDTASFKRRDGSPLPVEYIASPVMDKGNQVGVVLGFRDITQRRLVERQLR 394

Query: 627 RAKESAEKADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEXXXXXXXX 686
            AKE+AE  ++ KSEFLA MSHE+RTPMNG+IGMT LL +T L EEQR +AE        
Sbjct: 395 EAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRDSGES 454

Query: 687 XXXXXNEILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSRIAEDVPE 746
                N+ILDFSK+EAGK+ L +    +  ++  V ++ +P+A  K I ++S I   +  
Sbjct: 455 LLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRM 514

Query: 747 LIMGDADRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAKKLSLKFSVHDTGIGIPSE 806
           L+  D  RLRQVL+NL  NAVKFTE+G VSI V     P A+ + + F V DTGIGIP E
Sbjct: 515 LVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLERPGAQPM-VHFDVRDTGIGIPPE 573

Query: 807 KQPQLFQSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVESVEGKGSKFFFTLPVD 866
            Q +LF  F Q+  S  R+YGGTGLGLAIC+RL ELMGG +G+ES  GKGS+F+ ++P++
Sbjct: 574 AQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGKGSRFWMSVPME 633

Query: 867 PGGEWEENGAEDHELAEVLYTPDSGENTAAYAGRKXXXXXXXXXXXXXXXXXEAKYGPLR 926
                             L  P S                                   R
Sbjct: 634 ------------------LLAPQSA--------------------------APPDLTGHR 649

Query: 927 ILVAEDHPVNQRLILTMLEKRGYKADLAEN-----GQQALQAVLRQPYDLVFMDVQMPVM 981
           +LV +D+PVN  +I   L   G +     +     G+    A +  P+++  +D QMPV+
Sbjct: 650 VLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAAAMGTPWEVAVIDSQMPVV 709

Query: 982 SG 983
           +G
Sbjct: 710 TG 711



 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 68/106 (64%)

Query: 925  LRILVAEDHPVNQRLILTMLEKRGYKADLAENGQQALQAVLRQPYDLVFMDVQMPVMSGL 984
            LRILVAED+PVNQ++ L +L K G+  D+  +G +AL+AV   PYD+V MDVQMP M GL
Sbjct: 795  LRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDGL 854

Query: 985  TAAAGIREQAPLNHQPFIVAVTAYARPEDRERCLAVGMEDFVSKPF 1030
             A   IR  A    +  IVA+TA A   D + C   GM+ ++SKP 
Sbjct: 855  EATRAIRSLASAAARIPIVAMTANAMRGDDQMCFDAGMDGYISKPI 900


>ref|NP_936064.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 dbj|BAC96034.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 646

 Score =  298 bits (763), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 173/413 (41%), Positives = 239/413 (57%), Gaps = 24/413 (5%)

Query: 620  TNEQEIIRAKESAEKADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEX 679
            +N  E+  AKE AE A+  KSEFLA MSHE+RTPMNGIIG+  LL E DL+ EQ+ Y E 
Sbjct: 226  SNYAELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEMDLSSEQKQYVEM 285

Query: 680  XXXXXXXXXXXXNEILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSR 739
                        N+ILDFSKIEAGKM +  EP  +  ++  +  +++ KA  KN+     
Sbjct: 286  INHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAHAKNLQFVVE 345

Query: 740  IAEDVPELIMGDADRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAKKL-SLKFSVHD 798
            +AEDVP  + GD+  L+QVL NL+ NAVKFTE G V + V  E   +A+ +  ++F V D
Sbjct: 346  LAEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVVAKEL--DAQHIPHIRFQVFD 403

Query: 799  TGIGIPSEKQPQLFQSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVESVEGKGSK 858
            +GIGI  EKQ  +F+ F Q   S  RKYGGTGLGLAIC+RLV LMGG + ++S  G GS 
Sbjct: 404  SGIGIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELKSEVGLGSC 463

Query: 859  FFFTLP-VDPGGEWEENGAED-HELAEVLYTPDSGENTAAYAGRKXXXXXXXXXXXXXXX 916
            F F++P VD  G + ++  ++   L E+  T    E ++A+   +               
Sbjct: 464  FEFSVPCVDGEGVFAKDRKDNVRHLQELGVTELDSEPSSAHQSSQVAAVP---------- 513

Query: 917  XXEAKYGPLRILVAEDHPVNQRLILTMLEKRGYKADLAENGQQALQAVLRQPYDLVFMDV 976
                     R+L+ ED  +NQ++   MLEK G   D+AE+G+QAL    +Q Y ++FMD 
Sbjct: 514  ---------RVLLVEDTFINQKVAKLMLEKIGLAVDIAEDGEQALVLCQQQQYGIIFMDC 564

Query: 977  QMPVMSGLTAAAGIREQAPLNHQPFIVAVTAYARPEDRERCLAVGMEDFVSKP 1029
            QMPV+ G      +R          I+A+TA    ED++RC  VGM DF++KP
Sbjct: 565  QMPVLDGFETTEILRASDGWTRDVPIIALTANVVVEDKQRCFDVGMNDFLAKP 617


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 1,485,652,840
Number of extensions: 62339805
Number of successful extensions: 197436
Number of sequences better than 1.0e-05: 6378
Number of HSP's gapped: 188347
Number of HSP's successfully gapped: 7760
Length of query: 1048
Length of database: 757,237,578
Length adjustment: 136
Effective length of query: 912
Effective length of database: 387,984,114
Effective search space: 353841511968
Effective search space used: 353841511968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)