BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0072.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_251941.1| hypothetical protein [Pseudomonas aeruginosa PA... 253 5e-66 ref|ZP_00136600.1| COG1524: Uncharacterized proteins of the AP s... 251 1e-65 ref|NP_743882.1| conserved hypothetical protein [Pseudomonas put... 249 6e-65 ref|ZP_00128264.1| COG1524: Uncharacterized proteins of the AP s... 249 7e-65 gb|EAH81275.1| unknown [environmental sequence] 246 7e-64 >ref|NP_251941.1| hypothetical protein [Pseudomonas aeruginosa PA01] pir||E83240 hypothetical protein PA3251 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06639.1| hypothetical protein PA3251 [Pseudomonas aeruginosa PAO1] Length = 269 Score = 253 bits (645), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 129/267 (48%), Positives = 167/267 (62%), Gaps = 2/267 (0%) Query: 32 NKLIVVVLDGLRYDAARKYLGYMEHLVEQGQLSCYKVQSELPSLSRPLYEVLLTGTPVSR 91 + +I+V+LDGL + AR +G+++ L G+ Y+++ ELPSLSRPLYE +LTG P Sbjct: 3 HDVILVLLDGLNHSVARDCMGHLQALCGAGRGQSYRLECELPSLSRPLYECILTGVPPID 62 Query: 92 NGITANHIVRLSREQSVFHLXXXXXXXXXXXXYHWVSELYSSAPFHPVADRHQHNVLKPI 151 +GI N +VRLS+EQS+FH YHWVSELY+ APF P DRH + PI Sbjct: 63 SGILHNDVVRLSQEQSLFHYARAAGLSTAAAAYHWVSELYNRAPFDPARDRHTDDSALPI 122 Query: 152 QHGSFYFEDHYPDSHVFADAEYLRAAYDPHFLYIHTMNIDDAGHRHGGESKEYEMAVRRV 211 Q G FY+ DHYPDSH+FADAE LR + P+F+ +H+MNIDDAGHRHG S Y A RR Sbjct: 123 QRGHFYWSDHYPDSHLFADAESLRRRHAPNFMLVHSMNIDDAGHRHGLASPAYRNAARRA 182 Query: 212 DGLLATLLPQWMEQGYTVLVTADHGMNANGCHGGVTPAERHVPLYAFGEKVLSPEQEIQA 271 D LL+ L QW+ GY V +TADHGMN + HGG+ ER VPL+ FG+ S + Q Sbjct: 183 DALLSEYLHQWLAAGYQVAITADHGMNEDRSHGGILEEEREVPLFVFGD-AFSRDDLAQP 241 Query: 272 LPQLRLAPLMCYCLGIQPSAAMTKEGL 298 L Q L +C LG + +E L Sbjct: 242 L-QTDLCGTLCEILGAAHDKPVCRELL 267 >ref|ZP_00136600.1| COG1524: Uncharacterized proteins of the AP superfamily [Pseudomonas aeruginosa UCBPP-PA14] Length = 269 Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 128/266 (48%), Positives = 165/266 (62%), Gaps = 2/266 (0%) Query: 33 KLIVVVLDGLRYDAARKYLGYMEHLVEQGQLSCYKVQSELPSLSRPLYEVLLTGTPVSRN 92 +I+V+LDGL + AR +G+++ L G+ Y+++ ELPSLSRPLYE +LTG P + Sbjct: 4 DVILVLLDGLNHSVARDCMGHLQALCGAGRGQSYRLECELPSLSRPLYECILTGVPPIDS 63 Query: 93 GITANHIVRLSREQSVFHLXXXXXXXXXXXXYHWVSELYSSAPFHPVADRHQHNVLKPIQ 152 GI N +VRLS+EQS+FH YHWVSELY+ PF P DRH + PIQ Sbjct: 64 GILHNDVVRLSQEQSLFHYARAAGLSTAAAAYHWVSELYNRTPFDPARDRHTDDSALPIQ 123 Query: 153 HGSFYFEDHYPDSHVFADAEYLRAAYDPHFLYIHTMNIDDAGHRHGGESKEYEMAVRRVD 212 G FY+ DHYPDSH+FADAE LR + P+F+ +H+MNIDDAGHRHG S Y A RR D Sbjct: 124 RGHFYWNDHYPDSHLFADAESLRRRHAPNFMLVHSMNIDDAGHRHGLASPAYRNAARRAD 183 Query: 213 GLLATLLPQWMEQGYTVLVTADHGMNANGCHGGVTPAERHVPLYAFGEKVLSPEQEIQAL 272 LL+ L QW+ GY V +TADHGMN + HGG+ ER VPL+ FG+ S + Q L Sbjct: 184 ALLSEYLHQWLAAGYQVAITADHGMNEDRSHGGILEEEREVPLFVFGD-AFSRDDLAQPL 242 Query: 273 PQLRLAPLMCYCLGIQPSAAMTKEGL 298 Q L +C LG + +E L Sbjct: 243 -QTDLCGTLCEILGAAHDKPVCRELL 267 >ref|NP_743882.1| conserved hypothetical protein [Pseudomonas putida KT2440] gb|AAN67346.1| conserved hypothetical protein [Pseudomonas putida KT2440] Length = 278 Score = 249 bits (636), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 130/275 (47%), Positives = 170/275 (61%), Gaps = 4/275 (1%) Query: 26 FMT--ETANKLIVVVLDGLRYDAARKYLGYMEHLVEQGQLSCYKVQSELPSLSRPLYEVL 83 FMT + +I+V+LDGL Y A +G++ VE + + Y+V+ ELPSLSRPLYE + Sbjct: 5 FMTGENMQHNVILVLLDGLNYQVAHHAMGHLHAYVEADRAALYRVECELPSLSRPLYECI 64 Query: 84 LTGTPVSRNGITANHIVRLSREQSVFHLXXXXXXXXXXXXYHWVSELYSSAPFHPVADRH 143 LTG P +GI N+I RLS ++SVFH YHW+SELY+ +PF P DRH Sbjct: 65 LTGVPPIDSGIVHNNINRLSNQRSVFHYAREANLGTAAAAYHWMSELYNRSPFDPQRDRH 124 Query: 144 QHNVLKPIQHGSFYFEDHYPDSHVFADAEYLRAAYDPHFLYIHTMNIDDAGHRHGGESKE 203 H PIQHG FY++D YPDSH+ AD EYLR + P+FL +H M++DD GHRHG +S + Sbjct: 125 THAPKLPIQHGLFYWDDRYPDSHLLADGEYLRRRHAPNFLLVHPMSVDDVGHRHGLDSSQ 184 Query: 204 YEMAVRRVDGLLATLLPQWMEQGYTVLVTADHGMNANGCHGGVTPAERHVPLYAFGEKVL 263 Y A R VD LLA LP W+E+GY VLVTADHGMN + H G+ ER VPL+ FG+ Sbjct: 185 YRNAARSVDILLADYLPGWLEEGYQVLVTADHGMNNDRSHNGLLAEEREVPLFVFGD-AF 243 Query: 264 SPEQEIQALPQLRLAPLMCYCLGIQPSAAMTKEGL 298 S + + L Q L +C LG + +E L Sbjct: 244 SLDPAAKPL-QTELCGTICELLGAAHDKTVCRELL 277 >ref|ZP_00128264.1| COG1524: Uncharacterized proteins of the AP superfamily [Pseudomonas syringae pv. syringae B728a] Length = 268 Score = 249 bits (635), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 122/265 (46%), Positives = 166/265 (62%), Gaps = 4/265 (1%) Query: 33 KLIVVVLDGLRYDAARKYLGYMEHLVEQGQLSCYKVQSELPSLSRPLYEVLLTGTPVSRN 92 +I++VLDGL Y+ AR +G+++ + G+ + YK++ ELP+LSRPLYE +LTG + Sbjct: 4 NVILIVLDGLNYEVARHAMGHLQAWHDAGRAALYKIECELPALSRPLYECILTGVAPIDS 63 Query: 93 GITANHIVRLSREQSVFHLXXXXXXXXXXXXYHWVSELYSSAPFHPVADRHQHNVLKPIQ 152 GI N++ RLS ++S+FH YHWVSELY+ PF P DRH PIQ Sbjct: 64 GIVHNNVSRLSNQRSIFHYARDAGLSTAAAAYHWVSELYNRTPFDPARDRHTEAADLPIQ 123 Query: 153 HGSFYFEDHYPDSHVFADAEYLRAAYDPHFLYIHTMNIDDAGHRHGGESKEYEMAVRRVD 212 HG FY+ DHYPDSH+FADAE LR ++ P+FL IH MNIDDAGH+HG ++ +Y + R D Sbjct: 124 HGLFYWADHYPDSHLFADAESLRLSHAPNFLLIHPMNIDDAGHKHGLDTAQYRNSARSAD 183 Query: 213 GLLATLLPQWMEQGYTVLVTADHGMNANGCHGGVTPAERHVPLYAFGEKVLSPEQEIQAL 272 +LA L +W++ GY VLVTADHGMN + H G+ P ER VPL+ G+ + A Sbjct: 184 IILADYLQRWLDAGYQVLVTADHGMNNDRSHNGLLPEEREVPLFVIGDAF---SLNVDAA 240 Query: 273 P-QLRLAPLMCYCLGIQPSAAMTKE 296 P Q L +C LGI + +E Sbjct: 241 PRQTDLCGTVCELLGIPHDKPVCRE 265 >gb|EAH81275.1| unknown [environmental sequence] Length = 276 Score = 246 bits (627), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 121/257 (47%), Positives = 166/257 (64%), Gaps = 1/257 (0%) Query: 31 ANKLIVVVLDGLRYDAARKYLGYMEHLVEQGQLSCYKVQSELPSLSRPLYEVLLTGTPVS 90 A+K+IVV++DGL + A +GY+ +VE GQ + LPSLSRPLYE +LTG+ Sbjct: 1 AHKVIVVLVDGLSAEVAH-CMGYLAGMVEAGQGLQATLSCALPSLSRPLYECILTGSTPV 59 Query: 91 RNGITANHIVRLSREQSVFHLXXXXXXXXXXXXYHWVSELYSSAPFHPVADRHQHNVLKP 150 +GIT N + RLSR++S+FHL Y+WVSELY+ +P+ DR H+ P Sbjct: 60 ESGITHNGVSRLSRQESIFHLARAGGKRTAAAAYYWVSELYNQSPWQAARDRFTHDERLP 119 Query: 151 IQHGSFYFEDHYPDSHVFADAEYLRAAYDPHFLYIHTMNIDDAGHRHGGESKEYEMAVRR 210 IQHG FY++D YPDSH+ D E+LR+ YDP FL IH M +DDAGH+ G +S++Y RR Sbjct: 120 IQHGCFYWDDGYPDSHLLMDGEWLRSQYDPDFLLIHPMGVDDAGHQFGLDSRQYRNQARR 179 Query: 211 VDGLLATLLPQWMEQGYTVLVTADHGMNANGCHGGVTPAERHVPLYAFGEKVLSPEQEIQ 270 +D LLA LLPQW+ +GY V++T+DHGMN + HGG ER VPL+ FG+ ++ Sbjct: 180 MDSLLADLLPQWLAEGYQVVITSDHGMNNDLSHGGTLAEERRVPLWLFGDAFVAQWPAGP 239 Query: 271 ALPQLRLAPLMCYCLGI 287 A+ Q +L LM LG+ Sbjct: 240 AMQQTQLCALMADLLGV 256 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 438,927,598 Number of extensions: 17253570 Number of successful extensions: 31944 Number of sequences better than 1.0e-05: 34 Number of HSP's gapped: 31974 Number of HSP's successfully gapped: 34 Length of query: 319 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 194 Effective length of database: 417,850,203 Effective search space: 81062939382 Effective search space used: 81062939382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)